Search Results for "3d reconstruction sem" - Page 3
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Showing 88 open source projects for "3d reconstruction sem"
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XMIPP is an image processing suite for 3D-reconstruction of biological specimens from transmission electron microscopy data. NOTE that stable releases (including binaries) are longer stored at Sourceforge, but are available at http://xmipp.cnb.csic.es
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Automatic cell lineage reconstruction
Automatic segmentation and tracking for 3D time-lapse microscopy
From Amat et al., Nature Methods, 2014*: "The comprehensive reconstruction of cell lineages in complex multicellular organisms is a central goal of developmental biology. We present an open-source computational framework for segmentation and tracking of cell nuclei with high accuracy and speed. We demonstrate its (1) generality, by reconstructing cell lineages in four-dimensional, terabyte-sized image data of fruit-fly, zebrafish and mouse embryos, acquired with three different types of... -
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Gen3D
A tool for 3D genome and chromosome structural model construction
Gen3D is an application designed to determine three-dimensional genome and chromosome models. It uses chromosomal contact data to construct three-dimensional conformations. This method can generate three-dimensional chromosomal models satisfying a large portion of chromosomal contacts. The software is developed in Prof. Jianlin Cheng's Bioinformatics, Data Mining and Machine Learning Laboratory in the Computer Science Department at the University of Missouri - Columbia, USA. The project... -
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xmipp
Image processing suite for Electron Microscopy
XMIPP is an image processing suite for 3D-reconstruction of biological specimens from transmission electron microscopy data. NOTE that stable releases (including binaries) are longer stored at Sourceforge, but are available at http://xmipp.cnb.csic.es -
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Canopy Reconstruction
Software for the reconstruction of plants using multiple camera views
This software reconstructs 3D plant models in multiple views. Point cloud input is segmented, then patches of leaf surface are grown using the level set method. Please see the CPIB website for news of updates and further development. -
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DynamicRoots
Software for the Reconstruction and Analysis of Growing Plant Roots
This is a software platform for reconstructing and analyzing the growth of a plant root system from a time-series of 3D shapes. It aligns the shapes with each other, constructs a geometric graph representation together with the function that records the time of growth, and organizes the branches into a hierarchy that reflects the order of creation. The software includes the automatic computation of structural and dynamic traits for each root in the system enabling the quantification of... -
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...In this work, we studied photometric stereo approach as a single view 3D reconstruction technique, performed experimental validations on synthetic data. Matlab implementation is available. My co-worker was Mrs. Z. Alavi.
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Sage-sb
Semiautomatic generation of semantic building models from image series
We present an approach to generate a 3D model of a building including semantic annotations from image series. In the recent years semantic based modeling, reconstruction of buildings and building recognition became more and more important. Semantic building models have more information than just the geometry, thus making them more suitable for recognition or simulation tasks. -
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Magic3D provides basic functions of processing 3D point cloud and mesh. http://geometryhub.net/en/magic3d
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CCIA
This project takes camera captured images and correct them
Takes projective and affine distorted camera captured images and correct them for further use... like OCR, 3d reconstruction etc -
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3D Braincv
vectorize and analyze the cells and blood vessels simultaneously
This project was designed for vectorize and analyze the cells and blood vessels in the mouse brain simultaneously. ===Background=== The brain is the most complex object in the universe, which is mainly constitute by neuronal and vascular network. However, we still knows little about the detailed neuronal connections and vascular architecture, and the systematic reconstruction and analyses still remains a great challenge. One of the main obstacles is the lack of effective image analysis... -
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TrichEratops
TrichEratops is a software to study trichome patterning
TrichEratops applies focus stacking on a series of light microscopic pictures. The 3D surface from the stack is reconstructed using Elastic Map fitting. Trichomes can be marked on the Leaf surface and patterning statistics can be calculated from them. -
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flNeuronTool
A Fast Light Neuron Tracing and Editor Tool
The flNeuronTool allows users to reconstruct and proofread neuronal morphologies in light microscopy images. The system incorporates automatic tracing and manual editing of neuron reconstruction into a cooperative 3D interactive visualization-assisted environment, which is a powerful tool for analysis of complex neuronal images. -
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rPem3D
PET/PEM image reconstruction based on MLEM
Various utilities useful for handling PET data esp. of stationary planar PEM, including fully 3D ML-EM based image reconstruction, real time viewing of scanning image and the KDE based GUI for scanning, viewing and image reconstruction. -
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System Prototype to make 3D reconstruction solution using stereo images. It works with common cameras and not require large amount of memory during the images processing. It provides a low cost solution to educational environments with low budgets.
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PROJECT MOVED: see http://www.vmtk.org for up-to-date information. Libraries and tools for 3D reconstruction, geometric analysis, mesh generation and surface data analysis in image-based blood vessel modeling.
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Sentinal
PHP daemon to process 3d mesh algorithms
Primarily for use with the REVEAL web system this daemon polls a mysql database for 3d rendering requests. Currently the system will handle PMVS2 from U. Wash and Iray from Brown U. systems. Much of the code was ported from the osm-bundler system http://code.google.com/p/osm-bundler/ The daemon curently runs in win64/linux64 for PMVS and linux64 for Brown's Iray algroithm. The code has been tested and running on Ubuntu 11.10 -
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This is the C# project of our senior sem. program. It is random generation of a 2d world that then gets converted into 3d for the player to try to escape.
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EStereo is a computer vision C++ library for real-time disparity estimation. It computes dense stereo matching from 2 or 3 images as well as 3D scene reconstruction. The library also comes with a GUI-based application (StereoPlus).
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3D medical image platform for visualization and image processing. Segmentation with Levels sets. Surface reconstruction with marching Cubes, texture Mapping and Raycasting,DICOM support. Integration environment for VTK, ITK and vtkInria3D under wxWidgets
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iMorph is a multi-platform 3D morphological Tool for analyzing microstructure of porous media. It includes vizualization automatic segmentation, tortuosity and skeletization.
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Woa is a 3D reconstruction library, currently have not the ability to be a software, just a toy for somebody interesting in 3D reconstruction.
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StereoWorks is an easy to use yet powerful tool to create 3D reconstruction surfaces from stereoscopic SEM images. It allows the user to make detailed elevation maps from a pair of SEM images and obtain data such as height, area and roughness.
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HRS Reconstruction System This program build 3D model of object from range images. Program use modified volume reconstruction method for creating a model. In this method I replace difficult calculations on CPU with simple rendering on video card.
