Search Results for "particle-in-cell"
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Showing 1175 open source projects for "particle-in-cell"
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1
Particle Firmware for the Electron, P1
Device OS (Firmware) for particle devices
...In order to turn your source code into binaries, you will need a tool called make. Windows users need to explicitly install make on their machines. Make sure you can use it from the terminal window. The entire Particle firmware is contained in this repository. The main user code sits in the application.cpp file under firmware/user/src/ folder. Unless you know what you are doing, refrain from making changes to any other files. After you are done editing the files, you can rebuild the repository by running the make command in the firmware/main/ directory. ... -
2
awesome-single-cell
Community-curated list of software packages and data resources
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc. List of software packages (and the people developing these methods) for single-cell data analysis, including RNA-seq, ATAC-seq, etc. Rapid, accurate and memory-frugal preprocessing of single-cell and single-nucleus RNA-seq data. Find bimodal, unimodal, and multimodal features in your data. Ascend is an R package comprised of fast, streamlined analysis functions optimized to address the statistical challenges of single cell RNA-seq. ... -
3
CellTypist
A tool for semi-automatic cell type classification, harmonization
CellTypist is an automated tool for cell type classification, harmonization, and integration. Classification, transfer cell type labels from the reference to query dataset. Harmonization, match and harmonize cell types defined by independent datasets. integration, integrate cell and cell types with supervision from harmonization. CellTypist recapitulates cell type structure and biology of independent datasets. -
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nbcelltests
Cell-by-cell testing for production Jupyter notebooks in JupyterLab
nbcelltests is designed for writing tests for linearly executed notebooks. Its primary use is for unit testing reports. Cell-by-cell testing for production Jupyter notebooks in JupyterLab. To use in JupyterLab, you will also need the lab and server extensions. Typically, these are automatically installed alongside nbcelltests, so you should not need to do anything special to use them. The lab extension will require a rebuild of JupyterLab, which you'll be prompted to do on starting JupyterLab the first time after installing celltests (or you can do it manually with jupyter lab build). ... -
Cloudbrink Personal SASE serviceCloudbrink’s Personal SASE is a high-performance connectivity and security service that delivers a lightning-fast, in-office experience to the modern hybrid workforce anywhere. Combining high-performance ZTNA with Automated Moving Target Defense (AMTD), and Personal SD-WAN all connections are ultra-secure.
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Beampath
Beam dynamics simulations in linear accelerators and beamlines
BEAMPATH is a 2D and 3D code for simulation of space charge dominated beam dynamics in linear particle accelerators and beam transport. The program is used for particle-in-cell simulation of axial-symmetric, quadrupole-symmetric and z-uniform beams in a channel containing RF gaps, radio-frequency quadrupoles, multipole lenses, solenoids, bending magnets, accelerating waveguides. Detailed description of model can be found in Y.K.Batygin, “Particle-in-cell code BEAMPATH for beam dynamics simulations in linear accelerators and beamlines” Nuclear Instruments and Methods in Physics Research A 539 (2005) 455–489. -
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Seurat
R toolkit for single cell genomics
Seurat is a comprehensive R toolkit for single-cell genomics analysis, introduced by the Satija Lab at NYGC. It supports quality control, normalization, clustering, integration of multimodal data (e.g., scRNA‑seq, spatial, CITE‑seq), and visualization. Seurat v5 introduces scalable workflows and spatial transcriptomics support, commonly used in academic and industry research for single-cell studies. -
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Babylon.js
Open game and rendering engine packed into a JavaScript framework
...While Babylon.js keeps its code-first approach, we’ve added many tools in the Inspector and enhanced the Node Material Editor to save time to developers and Tech Artists. With the Particle Editor, you can now create and configure particle systems with the click of the mouse. -
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Scanpy
Single-cell analysis in Python
Scanpy is a scalable toolkit for analyzing single-cell gene expression data built jointly with anndata. It includes preprocessing, visualization, clustering, trajectory inference and differential expression testing. The Python-based implementation efficiently deals with datasets of more than one million cells. -
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DynamicalBilliards.jl
An easy-to-use, modular, extendable and absurdly fast Julia package
A Julia package for dynamical billiard systems in two dimensions. The goals of the package is to provide a flexible and intuitive framework for fast implementation of billiard systems of arbitrary construction. -
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10
Themis
Easy to use cryptographic framework for data protection
...Themis hides cryptographic details and eliminates popular mistakes. Themis provides ready-made building blocks (“cryptosystems”) for secure data storage, message exchange, socket connections, and authentication. Secure Cell is a multi-mode cryptographic container suitable for storing anything from encrypted files to database records. Use Secure Cell to encrypt data at rest. Secure Cell is built around AES-256-GCM, and AES-256-CTR. Secure Message is a simple encrypted messaging solution for the widest scope of applications. Use Secure Message to send encrypted and signed data from one user to another, from client to server, to prevent MITM attacks and avoid single secret leakage. ... -
11
pytablewriter
pytablewriter is a Python library to write a table in various formats
pytablewriter is a Python library to write a table in various formats: AsciiDoc / CSV / Elasticsearch / HTML / JavaScript / JSON / LaTeX / LDJSON / LTSV / Markdown / MediaWiki / NumPy / Excel / Pandas / Python / reStructuredText / SQLite / TOML / TSV / YAML. -
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MBeautifier
MBeautifier is a MATLAB source code formatter, beautifier
MBeautifier is a lightweight M-Script-based MATLAB source code formatter usable directly in the MATLAB Editor. -
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Handcalcs
Python library for converting Python calculations into rendered latex
Handcalcs is a Python library that auto-renders calculation code in Jupyter notebooks or LaTeX documents with step-by-step symbolic substitution, giving output a “handwritten” feel. It supports cell magics and auto-LaTeX generation via configurable output options. -
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harmonypy
Integrate multiple high-dimensional datasets with fuzzy k-means
Harmony is an algorithm for integrating multiple high-dimensional datasets. harmonypy is a port of the harmony R package by Ilya Korsunsky. Harmony is a general-purpose R package with an efficient algorithm for integrating multiple data sets. It is especially useful for large single-cell datasets such as single-cell RNA-seq. -
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Effekseer
This software is a particle effect editing tool
Effekseer is an open-source tool designed for creating stunning visual effects for games and multimedia applications. It allows artists and developers to design complex particle effects through an intuitive graphical user interface, supporting various features like particles, beams, and distortion effects. Effekseer supports multiple platforms and integrates seamlessly with popular game engines, enabling the creation of rich visual experiences without extensive programming knowledge. -
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nbmake
Pytest plugin for testing notebooks
Pytest plugin for testing and releasing notebook documentation. To raise the quality of scientific material through better automation. Research/Machine Learning Software Engineers who maintain packages/teaching materials with documentation written in notebooks. -
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nichenetr
NicheNet: predict active ligand-target links between interacting cells
...This model of prior information on potential ligand-target links can then be used to infer active ligand-target links between interacting cells. NicheNet prioritizes ligands according to their activity (i.e., how well they predict observed changes in gene expression in the receiver cell) and looks for affected targets with high potential to be regulated by these prioritized ligands. -
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Livewire PowerGrid
PowerGrid generates Advanced Datatables using Laravel Livewire
PowerGrid creates modern, powerful and easy-to-customize Datatables based on the Laravel Livewire library. Tables have basic features activated by default. Extend and customize your table including components (checkbox, action buttons, editable fields), global search feature, column data filters, and data export tool. Table components include feature examples. Just uncomment some code, enter your data, and it works. -
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Defold
Free game engine for development of desktop, mobile, and web games
Defold is an open-source, cross-platform game engine originally developed for 2D games but also capable of 3D — intended to give developers a turnkey solution for building games for desktop, mobile, web, and even consoles. It ships as a full editor/IDE, combining scene editing, asset management, scripting, and build/export pipelines, so developers don’t need to assemble disparate tools themselves. Game logic is written in Lua (with optional native extensions in C/C++ when needed), and the... -
20
CMSSW
CMS Offline Software
CMSSW is a collection of software used wherever CMS is needed. CMS is a particle detector that is designed to see a wide range of particles and phenomena produced in high-energy collisions in the LHC. CMSSW has one executable, cmsRun and many plug-in modules. -
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Flying Carpet
File transfer between Android, iOS, Linux, macOS, and Windows
Send and receive files between Android, iOS, Linux, macOS, and Windows over ad hoc WiFi. No shared network or cell connection required, just two devices with WiFi chips in close range. Don't have a flash drive? Don't have access to a wireless network? Need to move a file larger than 2GB between different filesystems but don't want to set up a network share? Try it out! -
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GoNB
GoNB, a Go Notebook Kernel for Jupyter
...As a side benefit it works with packages that use CGO — although it won't parse C code in the cells, so it can't be used as a C kernel. It already includes many goodies: cache between cell of results, contextual help and auto-complete (with gopls), compilation error context (by mousing over), bash command execution, images, html, etc. See the tutorial. It's been heavily used by the author (in developing GoMLX, a machine learning framework for Go), but should still be seen as experimental — if we hear success stories from others, we can change this. -
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CGAL
The Computational Geometry Algorithms Library
...These algorithms are useful in a wide range of applications, including computer aided design, robotics, molecular biology, medical imaging, geographic information systems and more. CGAL features a great range of data structures and algorithms, including Voronoi diagrams, cell complexes and polyhedra, triangulations, arrangements of curves, surface and volume mesh generation, spatial searching, alpha shapes, geometry processing, and many more. The use of these result in beautiful, visually complex and accurate representations. -
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SwissGL
SwissGL is a minimalistic wrapper on top of WebGL2 JS API
...Acting as a "Swiss Army knife" for WebGL2, it simplifies shader, texture, and framebuffer management into a single, expressive interface that enables developers to write complex GPU workflows in just a few lines of code. The library centers around one main function that unifies rendering and compute operations, allowing the creation of particle systems, GPGPU effects, and real-time simulations entirely on the GPU. Despite its simplicity and small size (under 1000 lines of code), SwissGL demonstrates remarkable flexibility, from basic visual experiments to complex multi-pass rendering pipelines. It’s also designed as an exploration of minimalist graphics API design, serving as an early experimental step toward the upcoming WebGPU era. -
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TCG
Terminal cell graphics library
Terminal Cell Graphics (TCG) is a Go library that enables 1-bit graphics rendering in terminal applications using Unicode block symbols. It's designed for developers who want to incorporate simple graphics into CLI tools or games, providing a unique way to display visuals in text-based environments.
