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Even in the simplified two dimensional HP-model (hydrophob/polar) the prediction of proteinfolding is NP complete. We implement a brute force algorithm with serial and parallel execution to solve short inputs of HP sequences (0-1 bitstrings).
Selbst im vereinfachten zweidimensionalen HP-Modell (hydrophob/polar) ist die Proteinfaltung bereits NP-vollständig. Hier implementieren wir einen brute-force Algorithmus zur Lösung kurzer Eingabesequenzen (0-1-Bitstrings) für die Proteinfaltung.
Spende einen Cappuccino:
Bitcoin: 1HqrdnfQgi9B4LW8UEvLAwh7X5gXPCoQ5B
Litecoin: Lbo2jxD85ymyq5167r7yFVZkEr73F2h44B
Paypal: paypal.me/GerritLeder
Credits
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Principle Investigator
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Gerrit Leder: protein folding algorithm design and testing, and initial implementation in Eiffel.
...
...Selbst im vereinfachten zweidimensionalen HP-Modell (hydrophob/polar) ist die Proteinfaltung bereits NP-vollständig. Hier implementieren wir einen brute-force Algorithmus zur Lösung kurzer Eingabesequenzen (0-1-Bitstrings) für die Proteinfaltung.
Spende einen Cappuccino:
Bitcoin: 1HqrdnfQgi9B4LW8UEvLAwh7X5gXPCoQ5B
Litecoin: LeCx44jGjHxiVZ8f6MyumLTCxPcp3ePKJT
Paypal: paypal.me/GerritLeder
CompuCell3D is a software framework for multimodel simulations of biocomplexity
problems. It has been developed as an ongoing project for the Interdisciplinary Center
for the Study of Biocomplexity at the university of Notre Dame.