Showing 364 open source projects for "sandbox:/mnt/data/project_plan.pod"

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  • 1
    TAS (Transcription Analysis System) is a multi-tier framework for running parameterized SQL queries. Users can analyze new data or new combinations of data with a few clicks in a GUI. Potentially complex/repetitive database interaction is all automated
    Downloads: 1 This Week
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  • 2
    GATA is a graphic alignment tool for comparative sequence analysis. It makes use of BLAST to graphically align two DNA sequences, creating box- line- box representations of window scored local alignments. GATA also displays extensive GFF gene annotation.
    Downloads: 3 This Week
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  • 3
    A Java software for 3D visualization of graphs/networks. It implements many graph layout algorithms (such as force-directed methods), graph generators (such as scale-free networks) and graph modifiers. Most functions can be accessed through its GUI.
    Downloads: 0 This Week
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  • 4
    Web-based Electronic Data Capture (EDC) software for clinical trials. Uses XML-based data store based on CDISC ODM standard for clinical data interchange.
    Downloads: 0 This Week
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  • 5
    ReadSeq is a program and library for conversion of biosequence data from one format to another, useful in various bioinformatics programs and services. It is written in Java, though an earlier version in C remains available.
    Downloads: 14 This Week
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  • 6
    ImportWizard - a Java based, dialog driven user interface for importing simple data files
    Downloads: 0 This Week
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  • 7
    TM4 is a suite of applications for managing and analyzing microarray data. TM4 provides data storage and tracking, image analysis, normalization, data filtering, clustering and statistical analysis capabilities. Includes MADAM, Spotfinder, MIDAS, and MeV.
    Downloads: 0 This Week
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  • 8
    Maple Tree is a Java based visualization tool used by researchers in the biological sciences to visualize and graphically browse the results of analyses of gene expression data collected from microarray experiments.
    Downloads: 0 This Week
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  • 9
    Wavelets At Work is a graphical tool (written in java) using wavelets in order to detect discontinuity of an input signal.
    Downloads: 0 This Week
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  • 10
    Annotated Gel Markup Language is a simple markup language that is being proposed to markup data obtained by 2D gel electrophorosis.The goal of AGML is to enable proteomics research move into the browsing mode of searching through existing databases.
    Downloads: 0 This Week
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  • 11
    GeNetDB, contraction of Genetic Network Database, is a bioinformatic platform destined to the study of genetic regulatory networks. It contains in one place the data and the way to study them, providing the user an access to all tools needed for his work
    Downloads: 0 This Week
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  • 12
    Network Visualization is a mature part of computer science that is enjoying a good deal of growth, partially fueled by Bioinformatics. Network is a synonym for Graph, and both refer to a collection of nodes and edges.
    Downloads: 0 This Week
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  • 13
    A Java program to parse chemical names using IUPAC nomenclature. The output can be either a visualisation of the molecule, or in a form for other programs to use (e.g. CML).
    Downloads: 0 This Week
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  • 14
    This tool integrates and enhances publicly available genome data from different sources into a local database. Using a web browser, scientists may view and query the data, keep persistent notes, and schedule batch services (such as BLAST) from NIH.
    Downloads: 0 This Week
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  • 15
    GeneX is an gene expression database system with an integrated toolset that enables researchers to store, analyze, and communicate their data.
    Downloads: 0 This Week
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  • 16
    OmniGene is a set of reausable components that have been packaged into frameworks. These frameworks are used to produce domain specific services for common bioinformatics tasks including: visualization, database access, and pipeline building.
    Downloads: 0 This Week
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  • 17
    ...You can write your Envolvable Code with it; You can make your computer write program itself; You can run program without compiling time; You can manage source as data
    Downloads: 0 This Week
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  • 18
    BioQuery is a bioinformatics tool that acts as a query builder for genetic, protein, publication, and other biomedical databases. BioQuery is also an update service that periodically resubmits saved searches and sends you new data as it is found.
    Downloads: 0 This Week
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  • 19
    Cytoscape is a software platform for computational biology and bioinformatics, useful for integrating data, and for visualizing and performing calculations on molecular interaction networks
    Downloads: 0 This Week
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  • 20
    SPedit is a new curation environment for the Swiss-Prot and TrEMBL databases. For more information about these databases see http://www.expasy.ch/sprot/ and http://www.ebi.ac.uk/swissprot/
    Downloads: 0 This Week
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  • 21
    A small Java program for reading, analysing, viewing and animating the data from an EEG machine during a psychology experiment.
    Downloads: 8 This Week
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  • 22
    This project provides software resources for creating solid models of proteins that can be printed on color 3D printers. The main focus is a java program that reads in a PDB file and produces a PLY format stick representation of the protein.
    Downloads: 0 This Week
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  • 23
    A framework for image analysis and data analysis, aimed towards microscopy and the needs of current research.
    Downloads: 0 This Week
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  • 24
    BIRBU (BIological Relationship BUilder) is a Java tool for microarray gene expression data analysis. BIRBU identifies biologically significant relationship between genes using microarray data and prior knowledge on relationships between genes.
    Downloads: 0 This Week
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  • 25
    ProteinArchitect facilitates the visual exploration of the architecture of proteins, including conserved domains, secondary structure elements and structurally flexible regions, e.g. in the context of the analysis of protein superfamilies.
    Downloads: 0 This Week
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