Showing 292 open source projects for "c:\program files\micronetics\msmws\program\"

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  • 1
    The program consgen takes multiple protein structures in PDB format and aligns them using a modified Procrustes method that aims to maximize residue similarity. The principal result is a consensus structure showing residue conservation.
    Downloads: 0 This Week
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  • 2
    Xipe-Totec is a companion program to the paper "An application of statistics to comparative metagenomics" by Beltran Rodriguez-Brito, Forest Rohwer and Robert Edwards BMC Bioinformatics 2006, 7:162 doi:10.1186/1471-2105-7-162
    Downloads: 0 This Week
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  • 3
    Cleaver is a program for comparing restriction endonuclease digests of orthologous DNA sequences from different taxa. It performs virtual restriction digests and searches for endonucleases that cleave DNA fragments from given taxa but not others.
    Downloads: 0 This Week
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  • 4
    Microarray Explorer (MAExplorer) is a Java microarray data-mining bioinformatics program. It includes data management, graphics, statistics, clustering, reports, gene data-filtering, user written MAEPlugins, documentation, tutorials, demo data.
    Downloads: 12 This Week
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    Powerful Business Process Automation

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  • 5
    Cluster Search, a program for genome-wide regular expression pattern matching.
    Downloads: 0 This Week
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  • 6
    ea-fold is a platform to perform protein folding simulations by means of evolutionary algorithms. The program implements a parallelized distributed evolutionary algorithms and a flexible force field.
    Downloads: 0 This Week
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  • 7
    SIP (Sample Inventory Program) is a web application for managing mass quantities of lab samples. It is the first out-of-the-box Zope 3 app, and is field-proven. SIP may be used as-is, or as inspiration for other Zope 3 apps. (e.g. O/R RDBMS storage)
    Downloads: 0 This Week
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  • 8
    NEV2lkit is a tool for handling neuronal event files.
    Downloads: 0 This Week
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  • 9
    ProteinMusic is a Java program converting DNA sequences into music. The original idea for this project came from R. D. King at the University of Wales, Aberystwyth and C. G Angus from the Shamen (King, R.D. & Angus, C.G. (1996)).
    Downloads: 0 This Week
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  • 10
    SpOK - The Spectrum Organisation Kit, a program for the organisation and visualisation of spectral data written in Java. Sorry - this project is not being continued. All functionality was integrated into the Bioclipse project...
    Downloads: 0 This Week
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  • 11
    Io (ISREC ontologizer) is a program to classify high-throughput genomics data (e.g. microarray results) in the Gene Ontology. Io includes a statistical estimation of the significance of data in the GO nodes and reannotation files for Affymetrix chips.
    Downloads: 0 This Week
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  • 12
    MicroArray Genome Imaging and Clustering Tool (MAGIC tool) is a platform-independant java program for analyzing MicroArray data (.tiff scans & .txt godlists) via graphs and clustering operations (including QT-clustering). http://www.bio.davidson.edu/magic
    Downloads: 1 This Week
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  • 13
    BioGeoTools is a Java based package that is aimed at providing a program and libraries for biogeorgaphy analyses.
    Downloads: 0 This Week
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  • 14
    The phase machine program allows supervised classification of DNA sequence data from different populations using haplotype sequences generated by the PHASE program.
    Downloads: 0 This Week
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  • 15
    A command-line program to manipulate annotated genetic sequences (initially in EMBL format). The user supplies a pattern to identify which features or qualifiers to process. These can then be deleted, renamed etc
    Downloads: 0 This Week
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  • 16
    ArrayOligoSelector (AOS) systematically designs gene specific long oligo probes for entire genomes. The program optimizes the oligo selections for several parameters, including uniqueness in the genome, internal repeats, self-binding, and GC content.
    Downloads: 0 This Week
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  • 17
    Phight - a phylogeny tree building program Currently, it supports Likelihood method and distance method. This program will includes diagnostic function as a special feature.
    Downloads: 0 This Week
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  • 18
    The Synaptic Simulator is a program which simulates models of single neuronal synapses and compartments, complex constructs of such models. Furthermore the program is able to regain parameters by fitting simulated results with experimental data.
    Downloads: 0 This Week
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  • 19
    (OBSOLETE) trace_utils is a program for processing sequencing trace data. The main goal of this program is to provide a completely free software in detecting SNPs like what polyphred has done, but with even higher accuracy and more flexibility.
    Downloads: 0 This Week
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  • 20
    ReadSeq is a program and library for conversion of biosequence data from one format to another, useful in various bioinformatics programs and services. It is written in Java, though an earlier version in C remains available.
    Downloads: 14 This Week
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  • 21
    Bio::Prospect:: is a Perl API to the PROSPECT threading application. The modules provide for program execution, results parsing, multiple sequence alignments inferred from pairwise sequence-structure alignments, and rudimentary homology models.
    Downloads: 0 This Week
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  • 22
    JKINSHIP: Java open source port of Macintosh Classic Kinship program
    Downloads: 0 This Week
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  • 23
    A Java program to parse chemical names using IUPAC nomenclature. The output can be either a visualisation of the molecule, or in a form for other programs to use (e.g. CML).
    Downloads: 0 This Week
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  • 24
    ABE is a small, fast and convenient program for visualizing and modeling experimental bioassay data. The data can be modeled using either polynomials or a more specific four-parameter model based upon the standard, sigmoidal dose-response curve.
    Downloads: 0 This Week
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  • 25
    GenomePixelizer is a program for comparative genomics, detection of duplication events in genomes, tracking the "footprints" of evolution. It may be considered as a drawing tool that generates custom images of genomes out of the given set of genes.
    Downloads: 0 This Week
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