Showing 978 open source projects for "user%20%26%20admin%20panel%20script"

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    GWI: On-demand Consumer Research

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  • 1
    Aiming to create a C library for phylogenetic analysis.
    Downloads: 0 This Week
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  • 2
    DeconSeq
    The DeconSeq tool can be used to automatically detect and efficiently remove sequence contamination from genomic and metagenomic datasets. It is easily configurable and provides a user-friendly interface. More at http://deconseq.sourceforge.net
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    Downloads: 0 This Week
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  • 3
    Framework for text mining, data integration and data analysis. Keywords: ontology and graph alignment, relation mining, warehouse, semantic database integration, bioinformatics, systems biology, microarray, Java.
    Downloads: 0 This Week
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  • 4

    Cylindrical BLAST Viewer

    Alignments in Rotating Cylinder / 3D

    3D viewer which arranges BLAST hits and other bioinformatics-related alignments in a rotating, cylindrical display. Feedback appreciated. NOTE: requires Java3d installation. Superceded by Cylindrical Alignment App
    Downloads: 0 This Week
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  • 5

    FluxModules

    Module Computation for Metabolic Networks

    Genome Scale Metabolic Networks are complex systems, Modules help to break them down and hence ease understanding and algorithmic complexity. FluxModules is a toolbox with code for module detection and module visualization.
    Downloads: 0 This Week
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  • 6

    MaryGold

    Variation analysis of metagenomic samples

    The package enables detection of sequence variation between metagenomic samples.
    Downloads: 0 This Week
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  • 7
    dna-barcode

    dna-barcode

    Find and analyze barcodes in DNA sequence files

    Find and analyze barcodes in DNA sequence files
    Downloads: 0 This Week
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  • 8
    GaloisExplorer provides a user-friendly interface for basic functionalities of Formal Concept Analysis (FCA) with different lattice generation algorithms and an interactive viewer to explore a 3-dimensionally laid out lattice.
    Downloads: 0 This Week
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  • 9
    openDICOM.NET - DICOM library, console tools, DICOM viewer/browser for Mono/.NET and Beagle Desktop Search Plugin. The project supports ACR-NEMA and DICOM file formats and provides transcoding to XML. It is written in C# and licensed under (L)GPL.
    Downloads: 12 This Week
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  • 10
    SecStAnT

    SecStAnT

    Secondary Structure Analysis Tool for data selection and statistics

    SecStAnT is a tool for the automatic creation of data-sets of structures from Protein Data Bank (PDB) with user-defined structural composition, and for the calculation of their internal variables distributions. SecStAnT is able to 1. Select from PDB data sets of structures based on user specified secondary structures (defined based on internal PDB classification or on DSSP) and/or sequence motives. 2. Build Data-sets at different levels of resolution (all atoms, only backbone, only Cα, ...) 3. ...
    Downloads: 0 This Week
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  • 11

    OrthoRBH

    Rapidly identify orthologous cDNA sequences in related species

    OrthoRBH is a tool/pipeline designed to identify families of protein coding transcripts/genes in related species using a reciprocal blast method. It can search through databases of full-length cDNAs, ESTs or mRNA-seq data. Optional assembly of candidate sequences allows assembly of contigs. It is suited to handling a mixture of EST and mRNA-seq sequence data. It performs batch blast searches, so it is ideal for large multi-gene families. After collecting candidate sequences, it performs...
    Downloads: 0 This Week
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  • 12

    eHealth Charter

    GUI for the coocking hacks eHealth

    GUI for the cooking hacks eHealth Biomedic Sensor Platform. It reads the data through the USB.
    Downloads: 0 This Week
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  • 13
    Bioinformatic tools for analyzing an orfeome using translated ORFs and compares each ORF to the provided Orfeome/Proteome. Our script uses NCBI BLAST run locally and MySQL as the main engines in a new and interisting way. It is designed specifically for Poxvirus genomes, and provides the VACV-COP nomenclature and Cowpox Ortholog groups per each ORF. The BLAST stats are generated when compared to the Proteome you provide. It can be easily adapted for other genomes.
    Downloads: 0 This Week
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  • 14

    AutoMap

    AutoMap is a tool for structural biology and drug design.

    AutoMap takes a series of poses obtained from molecular docking and applies the site, epitope and conformational mapping techniques to the poses to select likely ligand binding modes.
    Downloads: 0 This Week
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  • 15
    AJT is a set of utility classes for Java for handling some bioinformatics data, graphics file export, GUI widgets, and classes that should long have been added to the official Java API.
    Downloads: 0 This Week
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  • 16
    compare-results

    compare-results

    Program comparing Simulation Results for the SBML TestSuite

    Compare SBML Test Suite Results =============================== The [SBML Testsuite](http://sbml.org/Facilities/Online_SBML_Test_Suite) allows developers of ODE based simulators to test their implementation against a large number of test cases that test a wide aspect of the [SBML Specifications](http://sbml.org/Documents/Specifications). While implementing my simulator [RoadRunner](http://roadrunner.sf.net) I wanted to be able to compare it using a wider range of parameters: -...
    Downloads: 0 This Week
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  • 17
    iTree: scalable multithreaded phylogenomic pipeline
    Downloads: 0 This Week
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  • 18
    PRINSEQ
    A bioinformatics tool to PRe-process and show INformation of SEQuence data. The tool is written in Perl and can be helpful if you want to filter, reformat, or trim your sequence data. It also generates basic statistics for your sequences.
    Downloads: 3 This Week
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  • 19
    Ergatis is a web-based utility used to create, run, and monitor reusable computational analysis pipelines, utilizing the Workflow engine. It contains pre-built components for common bioinformatics analysis tasks.
    Downloads: 0 This Week
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  • 20

    SchizoHit

    cluster paired-end sequences

    Like CD-HIT, but works with paired-end reads
    Downloads: 0 This Week
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  • 21
    ConoSorter

    ConoSorter

    A Large-scale Cone Snail Transcriptome/Proteome Analysis Program

    ...ConoSorter also generates a set of relevant additional information (frequency of protein sequences, length, number of cysteine residues, hydrophobicity rate of N-terminal region) and automatically searches ConoServer database to allow the user to assess the reliability and relevance of the results and to aid the identification of new conopeptide superfamilies and classes.
    Downloads: 0 This Week
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  • 22
    Used to record and analyze some behavioural experiments in neuroscience (using usb webcam). it was developed in collaboration with neuropharmacology lab at Faculty of Medicine, Ain Shams University. it can use(JMF,OpenCV,JMyron & AGCamLib) for webcam
    Downloads: 1 This Week
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  • 23

    StochDecomp

    User Manual describing theory behind the package, installation instruc

    Stochasticity is an indispensable aspect of biochemical processes at the cellular level. Studies on how the noise enters and propagates in biochemical systems provided us with nontrivial insights into the origins of stochasticity, in total however they constitute a patchwork of different theoretical analyses. Here we present a flexible and generally applicable noise decomposition tool, that allows us to calculate contributions of individual reactions to the total variability of a system’s...
    Downloads: 0 This Week
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  • 24
    Snp Viewer

    Snp Viewer

    A program for visualising Affymetrix SNP array data

    A program for visualising Affymetrix SNP array data for identification regions of homozygosity. Written to aid autozygosity mapping and aid the discovery of potential disease loci.
    Downloads: 3 This Week
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  • 25
    TagCleaner
    TagCleaner is an application that is able to automatically detect and efficiently remove tag sequences from metagenomic datasets. It is easily configurable and provides a user-friendly interface.
    Downloads: 2 This Week
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