Showing 292 open source projects for "c:\program files\micronetics\msmws\program\"

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  • 1

    coords-view

    Graphically displays nucmer/mummer mapping results

    ...Command line options allow for different features when producing the image. Within the code there are comment blocks which give examples of how to further customize it i.e. grouping based on name similarity, color, etc. This program is aimed at providing full customization within the limits of the Bio-Graphics module. Current version supported is Bio-Graphics-2.25
    Downloads: 0 This Week
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  • 2
    Hyperballs
    We present an improved ball and stick representation called HyperBalls. This type of depiction is particularly useful to represent dynamic phenomena, such as the evolution of non covalent bonds and takes advantage of GPU capabilities. HyperBalls are now fully integrated into the UnityMol software and are actively developed in that context. You will find the most up-to-date versions of the shaders in the http://unitymol.sourceforge.net project.
    Downloads: 0 This Week
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  • 3

    Clinical Evidence Detector

    Detector of clinical evidence

    This is a Python program based on the NegEx algorithm that detects the polarity of the clinical evidence in clinical random trials. If you use this code please cite this paper: P. Davis-Desmond and Diego Mollá. Detection of Evidence in Clinical Research Papers (2012). Australasian Workshop On Health Informatics and Knowledge Management (HIKM 2012), Melbourne, Australia.
    Downloads: 0 This Week
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  • 4
    Flow Investigation using N-Dimensions
    Flow Investigation using N-Dimensions (FIND) is a program designed for analysis and visualization of Flow Cytometry data. FIND focuses specifically on automated population discovery (clustering) methods. The project targets both users and developers.
    Downloads: 0 This Week
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    Waitlist App and Paging System

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  • 5
    The program versusSNP is a flexible tool for mining SNPs between two close related genomes. First, we align all the orthologous genes and select SNPs, then the SNPs are separated into categories based on their mutation types.
    Downloads: 0 This Week
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  • 6
    MSA2SNP is a tool for mining SNP sites in multiple sequence alignment (MSA). This tool inherits the easy-to-use interface from MEGA4 Explorer with advance data presentation. MSA2SNP lets you visualize alignments and import from CLUSTAL program directly.
    Downloads: 0 This Week
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  • 7
    This is a research-level program used to track protein translocation in live cell imaging experiments when the nucleus is not specifically marked by either stain or transfected fluorescent proteins.
    Downloads: 0 This Week
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  • 8
    This is a wxWidgets-based, cross-platform graphical frontend for the maximum-likelihood phylogenetic inference program RAxML created by Alexis Stamatakis (A. Stamatakis, Bioinformatics 22(21):2688-2690, 2006)
    Downloads: 0 This Week
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  • 9
    Utility to convert PED genome file into RAW SNP format. Creates multiple files per person. Supports big files. The same conversion utility has been included into "aisconvert" toolkit, so this project is rather deprecated.
    Downloads: 0 This Week
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  • 10
    GRANULE is a flashcards program based on Leitner cardfile methodology for learning new words. It features long-term memory training capabilities with scheduling, integrated pictures, sound, and full-screen mode.
    Downloads: 2 This Week
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  • 11
    This is a multi-threaded Java program that tries to maximise CPU utilization by separating and distributing the computational part of the work from the file reading and writing part by using separate threads.
    Downloads: 0 This Week
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  • 12
    The program receives signal from a butterfly antena (using an electronic board connected to the butterfly's antena and to a khepera robot). The program then provides different fonctionalities to analyse data and control the robot.
    Downloads: 0 This Week
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  • 13
    The sibRNAfold program is a modification of the Vienna RNAfold program for RNA secondary structure prediction through energy minimization.
    Downloads: 0 This Week
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  • 14
    Image analysis program that extract the movements of the bacteria from digitised movies and data processing associated.
    Downloads: 0 This Week
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  • 15
    GEAX is a Java application used to visualize and analyze cross-species gene expression microarray data.The program allows comparisons based on fold-change, p-value, quantile matching, or a combination of criteria.
    Downloads: 0 This Week
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  • 16
    Luminous is a set of programs and C++ classes to handle Illumina GTC files.
    Downloads: 0 This Week
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  • 17
    A set of utilities to handle individual-level genotype data files
    Downloads: 0 This Week
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  • 18
    ...Patients, specimens, blocks, slides, cores, images, and scores can all be stored and viewed. Features include advanced security, custom dynamic fields, and an image analysis program.
    Downloads: 0 This Week
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  • 19
    Skittle Genome Visualizer

    Skittle Genome Visualizer

    Skittle Development MOVED to Github

    Skittle is a 2D visualization of genome sequence files. The program assigns four colors to the four nucleotides and text wraps the sequence to create a 2D picture based on the DNA sequence. Great for researching tandem repeats and chromosome structure. Compiled downloads available at http://dnaskittle.com/ Source maintained at https://github.com/josiahseaman/skittle
    Downloads: 0 This Week
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  • 20
    Executable program that measures sizes and other properties of colonies arrayed in a grid format (intended for 768, 384, or 96 colonies on agar plates) from jpeg images
    Downloads: 0 This Week
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  • 21
    FastPval is multiple stage p-value computing software that computes empirical p-values from a large set of permutated/resampled background data.
    Downloads: 0 This Week
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  • 22
    FusionMiner
    FusionMiner is a molecular biology program which accepts genomic alignments in BLAST/BLAT tabular output and attempts to find true fusion transcripts. A single command runs the pipeline and generates results.
    Downloads: 0 This Week
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  • 23
    Juggernaut is a high throughput out of core sequence assembly algorithm. This program is very useful in assembly projects involving massive number of short reads which originate from high coverage of the genome.
    Downloads: 0 This Week
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  • 24
    FAS-DPD
    FAS-DPD is a program to design degenerate primers for PCR.
    Downloads: 0 This Week
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  • 25
    Murasaki
    Whole-genome scale multiple genome local alignment search program. Supports unlimited length gapped-seed patterns, parallelization through distributed hashing, and unique a TF-IDF based repeat filtering method.
    Downloads: 1 This Week
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