Showing 35 open source projects for "git:/git.code.sf.net/p/docfetcher/code"

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  • 1
    The Princeton Protein Orthology Database (P-POD), developed by the Genome Databases Group at Princeton, computes and displays families of orthologs between multiple organisms.
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  • 2
    Scanner based Bioparsers
    Parsers for biological data based on scanner generators like Flex (C), Re2c(C), Jflex (Java) and Ifickle (Tcl). This scanner generators are providing easier maintainance, development and higher speed than hand written scanners. Scanner output is SQL.
    Downloads: 0 This Week
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  • 3
    Perl code scafflod for the automatic execution of main Next Generation Sequencing data processing and analysis.
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  • 4
    Common code developed by researchers in the Edwards Bioinformatics Group at SDSU. This code is free for everyone to use. It is our base code that we provide on an as-is basis. Please let us know if you use the code or have questions/comments
    Downloads: 0 This Week
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  • Go beyond a virtual data room with Datasite Diligence Icon
    Go beyond a virtual data room with Datasite Diligence

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  • 5
    DEPRECATED PROJECT! SolexaTools is becoming the SeqWare project (http://seqware.sourceforge.net) to better reflect its expanded sequencer support. Please go to this project page for code and documentation.
    Downloads: 0 This Week
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  • 6
    TraceTuner

    TraceTuner

    DNA sequencing quality values, base calling and trace processing

    Tracetuner is a tool for base and quality calling of trace files from DNA sequencing instruments. Originally developed by Paracel, a Celera Business, this code base was released as open source in 2006. TraceTuner was used by Celera to call 30+ million reads from both Drosophila and human genome sequencing projects. In 2000, Applied Biosystems bundled TraceTuner with ABI3700 Genome Analyzers and shipped it to the customers of these capillary electrophoresis sequencers. Later versions of TraceTuner, which support mixed base calling, have been used by the research community, the private biotech sector, and the U.S. government as components of different variant detection, genotyping and forensic software applications (e.g. ...
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  • 7
    Autoprime

    Autoprime

    Automated primer design using EnsEMBL

    AutoPrime allows to rapidly design primers for real-time PCR measurement of eukaryotic expression. By connecting to the EnsEMBL database gene structure information is used to find primers spanning exon borders. This way only expressed sequences are captured. Additionally mispriming on repetitive regions can be avoided using information from RepBase.
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  • 8
    ...The database software is intended to be of general use and usage of our software by other similar projects is encouraged. Thanks to the Saccharomyces Genome Database (SGD) for lots of code.
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  • 9
    Mister Model is a code generation system. It takes a UML model expressed as XMI and generates source code specifically designed to work in a cross-platform web service environment. It fixes the legendary 'Serialization Failed' messages in web services
    Downloads: 0 This Week
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  • Teradata VantageCloud Enterprise is a data analytics platform for performing advanced analytics on AWS, Azure, and Google Cloud. Icon
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  • 10
    Code repository for the Laboratory for Genome Bioinformatics at Texas A&M. The LGB project was initiated primarily to support biologists at Texas A&M needing help with bioinformatics in order to use new genomic technologies.
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