Search Results for "/storage/emulated/0/android/data/net.sourceforge.uiq3.fx603p/files" - Page 21

Showing 907 open source projects for "/storage/emulated/0/android/data/net.sourceforge.uiq3.fx603p/files"

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  • 1

    Linking Yabi with RDA

    This software system enables publication of YABI workflows to the RDA.

    ...By sharing the description of their workflows, scientists facilitate the diffusion and re-use of their data. This website provides access to the workflows and datasets that have been made public. By login in, scientist can edit, manage and publish their collection descriptions to the Research Data Australia.
    Downloads: 0 This Week
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  • 2
    MIDA

    MIDA

    Mitochondiral Infectious Damage Adaptation (MIDA) model of aging

    ...The provided source code is written in C and performs the time integration of the master equation for the time-evolution of the probability to find mitochondria in states of quality q at time t. Output is generated in terms of data files and the graphical visualization of readout parameters is automatically performed using the Graphical Layout Engine (GLE; see: http://glx.sourceforge.net/). Please, send email to thilo.figge<at>hki-jena.de to request a copy of the source code.
    Downloads: 0 This Week
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  • 3

    CRUMp

    A probabilistic prediction system of protein phosphorylation sites

    ...Given an input set of protein sequences in FASTA format, the system outputs the position, residue type (S, T, or Y), and the estimated probability of each tested site being phosphorylatable. Latest downloadable files: - crump-0.2.0.tar.gz: CRUMp GNU Octave package - crump-0.2.0.zip: CRUMp MATLAB script - crumptestset.fasta: A testing dataset in FASTA format. The sequence headers list the accession number of the protein sequence and the position numbers of known phosphorylation sites. Note that CRUMp may predict additional phosphorylation sites that have not been experimentally verified yet. ...
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  • 4

    samsn

    A tool to handle multi-stage mass spectrometry data

    The source code for SAMSN can be found in github at https://github.com/miquelrojascherto/samsn
    Downloads: 0 This Week
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  • 5

    Linking BPA with RDA

    This software system enables publication of ISA-Tab files to RDA.

    ...These large scale genomic, proteomic and metabolomic datasets are being generated and centrally managed by Bioplatforms Australia in collaboration with leading scientists, research institutes and government agencies. With the support of ANDS, QFAB has developed this web application to enable the publication of these datasets to Research Data Australia (RDA). By login in, BPA can upload ISA-Tab descriptions of their studies and can edit, manage and publish their collection descriptions to Research Data Australia.
    Downloads: 0 This Week
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  • 6
    FluxY

    FluxY

    FluxY – a processing tool set for stable isotope label MS data

    FluxY is a command line based high-throughput processing tool set for stable isotope labelled mass spectral data used for metabolic flux analysis. To get started simply download and unzip the FluxY.zip file and follow the getting started document in the Instructions folder.
    Downloads: 0 This Week
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  • 7
    SmithWaterman

    SmithWaterman

    Fast local sequence alignment for the masses!

    MOVED TO GITHUB: https://github.com/noporpoise/seq-align An implementation of the Smith-Waterman local sequence alignment algorithm. See our sister project global alignment using Needleman-Wunsch: http://sourceforge.net/projects/needlemanwunsch/
    Downloads: 3 This Week
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  • 8
    A MATLAB package for wavelet analysis of circadian rhythms with both discrete (Daubechies) and continuous (Morlet) wavelets, as well as tools for batch processing of multiple time series, all accessible through a graphical user interface.
    Downloads: 0 This Week
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  • 9
    A R based universal workflow for analysising miRNA sequencing data
    Downloads: 0 This Week
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  • 10
    Evoker is a graphical tool for plotting genotype intensity data in order to assess quality of genotype calls. It implements a compact, binary format which allows rapid access to data, even with hundreds of thousands of observations. PLEASE NOTE: This source repository is no longer active. See the github link above for the latest version.
    Downloads: 0 This Week
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  • 11
    CNViewer

    CNViewer

    CNViewer shows CNV and LOH data in affected and unaffected individuals

    CNViewer is designed to allow the visual comparison of copy number (CN state) and loss of heterozygosity (LOH) data from Affymetrix SNP 6.0 microarrays between affected and unaffected members of a pedigree. The program aims to allow the identification of regions where the values of either the CN state or the LOH scores are the same in all the affected individuals, but none of the unaffected individuals have the same value. As well as visualising the CN state and LOH data, the program will also display Log(2) ratio, smooth signal and allele difference values that may also be obtained from the Affymetrix SNP 6.0 array (details on how to export the data are here). ...
    Downloads: 0 This Week
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  • 12
    Index biological data (genbank sheets, Uniprot...) in a Solr indexer, with index shard support and provides a query interface. Project goal is to create a virtual image with indexer and web interface to query and visualize biological data.
    Downloads: 0 This Week
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  • 13
    BioAGENDA
    AGENDA (Application for mining Gene Ontology Data)
    Downloads: 0 This Week
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  • 14
    If you manage phylogenetic data, Bio::NEXUS can make your life easier with a library and ready-made tools to manipulate and visualize NEXUS files (see http://www.molevol.org/nexplorer and http://search.cpan.org/dist/Bio-NEXUS/doc/Tutorial.pod).
    Downloads: 0 This Week
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  • 15
    SemaRule Navigator
    SemaRule Navigator is an Integrated Suite of Open-Source and Free-License Software, placing Semantic and Text Analysis Technologies in the toolbox of Researchers, Students, and Enterprises.
    Downloads: 0 This Week
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  • 16
    Python module for manipulation of Crystallographic Information Framework (CIF) files
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    Downloads: 0 This Week
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  • 17
    auto-importer
    ATOM is an OMERO client which allows automated import of image data into OMERO. ATOM is provided as is without any guarantees or warranty. The author is not responsible for any damage or losses of any kind caused by the use or misuse of the programs.
    Downloads: 0 This Week
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  • 18

    metaProt

    Pipeline to analyze coding regions in metagenomic projects

    metaProt is a python pipeline to analyze and extract data from protein sequences found in metagenomic projects. It integrates several existing tools (HMMer, Pepstats, Blast...) to be used against custom databases. Please, read the README.txt file to find more about this.
    Downloads: 0 This Week
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  • 19

    xemload

    Generate XEML documents from your CSV metadata records

    XEML is a language that is used to represent and design plant growth experiments. Using a wizard like interface, XemLoad allows users to transform the environmental conditions records stored as CSV files into XEML files. The experiment can either be an existing XEML document or it can be created from scratch using XemLoad. Environmental Conditions must be paired with dedicated ontologies terms, the default one being the embedded XEO (Xeml Environmental Ontology). XEO was also redesigned as part of this projet to get rid of inconsistencies and redundancy that existed in the original version.
    Downloads: 0 This Week
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  • 20
    ViAmI-Server

    ViAmI-Server

    Pattern recognition for ADL events

    This software uses computer vision algorithms for mining sequence data from telemonitoring data with CBRs. We propose an approach which treats the detection of changes in behavior detected with a sensor/video fusion, which occur at radically different time-scales, through a CBR in two levels: low and high level. The system is always updating the database with the daily data.
    Downloads: 0 This Week
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  • 21

    fqpack

    FASTQ compression

    Provides bitwise, context-based 2nd generation data compression for large FASTQ-based files
    Downloads: 0 This Week
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  • 22
    Lindenmayer ist ein Programm zur Visualisierung von L- bzw Lindenmayer-Systemen mittels hübscher Baumgrafiken. Die ausführbaren Dateien und Hinweise zum Quellcode finden Sie auf unserer Homepage unter http://lindenmayer.berlios.de/.
    Downloads: 0 This Week
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  • 23
    DeltaQt

    DeltaQt

    Parser for DELTA files (Qt, C++)

    DeltaQt is part of the FreeDelta project and aims to implement a parser for DELTA (DEscription Language for TAxonomy) files using the Qt core framework. DeltaQt is a library intended to be incorporated into other applications that require the ability to parse DELTA files.
    Downloads: 0 This Week
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  • 24
    Phenex
    Phenex is an application for annotating taxa and phenotypes in character matrix files with ontology terms. Phenex saves ontology annotations alongside traditional character matrix data using the NeXML format standard for evolutionary data. Current Phenex development is taking place at GitHub: https://github.com/phenoscape/Phenex
    Downloads: 0 This Week
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  • 25
    GoFigure2 is an open-source, cross-platform application for visualizing, processing and analyzing of multidimensional microscopy data. Users can visualize, segment and track cells through time, detect cell-division and ultimately generate lineages.
    Downloads: 1 This Week
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