Showing 254 open source projects for "git:/git.code.sf.net/p/docfetcher/code"

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  • 1

    NKA

    Nonlinear Krylov acceleration of fixed-point and Newton-like methods

    ...The NKA project provides the canonical implementation of the method for several programming languages. The black-box accelerator is simple to integrate into existing code. Placed in the iteration loop, it observes the sequence of solution updates and replaces them with improved updates using information it has gleaned from previous solution iterates. It was only recently recognized (2011) that NLK is essentially equivalent to Anderson Acceleration for a specific choice of mixing parameter. NLK was independently devised in the late 1980's using a very different approach, and though it leads to the same algebraic method, NLK's organization is somewhat different, and arguably superior. ...
    Downloads: 0 This Week
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  • 2
    A C library for big numbers. bign.tar.gz is the set of library files. Expand it wherever you want. bnstart.html is a beginners guide. buserdoc.html is definition and complete instructions. Everything works.
    Downloads: 3 This Week
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  • 3
    GridPACK is a community-developed open-source collection of code for use in power systems research, analysis, and operation.
    Downloads: 0 This Week
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  • 4
    The Systems Biology Ontology project (SBO) goal is to develop controlled vocabularies and ontologies tailored specifically for the kinds of problems being faced in Systems Biology, especially in the context of computational modeling. !!!! Important Announcement !!!! We have moved the curation and development of Systems Biology Ontology (SBO) to a git-hub repository https://github.com/EBI-BioModels/SBO. Hence, this SourceForge SBO project has also been retired. Please use the Git-Hub issue tracker https://github.com/EBI-BioModels/SBO/issues to request the addition of new terms.
    Downloads: 0 This Week
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  • Online Project Management Platform - Zoho Icon
    Online Project Management Platform - Zoho

    A plan put together with small businesses and startups in mind.

    Zoho Projects is a cloud-based project management solution that helps teams plan, track, collaborate, and achieve project goals.
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  • 5
    MathParser Java - Math Parser library

    MathParser Java - Math Parser library

    Mathematical Parser for Java

    This project gives a mathematical parser for converting a simple string expression into a result which can be managed for using in other calculations, all in Java. Using a couple lines of code, you'll be able to parse complex arithmetic expressions efficiently. This library is powered by Dijkstra's Shuting-yard algorithm. The library has no dependencies with other external libraries. Dependency <dependency> <groupId>com.google.code.mathparser-java</groupId> <artifactId>mathparser-java</artifactId> <version>1.0.0</version> </dependency> Expressions supported (Mar/09/2013) - Arithmetic operations. ...
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  • 6
    Robust Correlation Toolbox

    Robust Correlation Toolbox

    Free Matlab toolbox to compute robust correlations

    The Robust Correlation Toolbox is a free collection of Matlab functions allowing to visualize data in univariate and bivariate space, check assumptions of normality and homoscedasticity and compute Pearson's and Spearman's, percentage bend, and skipped correlations with bootstrapped confidence intervals - see http://www.frontiersin.org/Quantitative_Psychology_and_Measurement/10.3389/fpsyg.2012.00606/full -- code moved to https://github.com/CPernet/robustcorrtool
    Downloads: 0 This Week
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  • 7

    f2what

    Lapack/quadprog QP for VBA/.Net/Java

    F2what is an open source project to translate algorithmic fortran to a variety of languages (java, dotnet and VBA so far). It offers a Fortran77 parser with code transformations, variable disambiguation, and modular output to other programming languages. It also offers already translated versions of Lapack and quadprog to Java, .Net and VBA, to give access to SVD, LU, QR, Cholesky, eigenvalue decomposition, linear system solving and QP optimization in those three languages.
    Downloads: 1 This Week
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  • 8
    parFE is fully-parallel high-performance finite element code targeted to the modeling of trabecular bones in humans. It employs scalable multigrid solvers for efficient solutions on massively parallel computers.
    Downloads: 0 This Week
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  • 9

    DyMMM

    Dynamic Multispecies Metabolic Modeling framework

    ...The DyMMM framework was formerly known as the DMMM framework. Please use the following citation for bibliographical purposes: Zhuang, K., Izallalen, M., Mouser, P., Richter, H., Risso, C., Mahadevan, R., & Lovley, D. R. (2011). Genome-scale dynamic modeling of the competition between Rhodoferax and Geobacter in anoxic subsurface environments. The ISME journal. Zhuang, K., Ma, E., Lovley, D. R., & Mahadevan, R. (2012). The design of long-term effective uranium bioremediation strategy using a community metabolic model. ...
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  • 10

    MCPerm: Monte Carlo SNP permutation

    Monte Carlo permutation method for SNP multiple test correlation

    ...However, it relies on the original single nucleotide polymorphism (SNP) genotypes and phenotypes data to perform a large number of random shuffles, and thus it is computationally intensive, especially for genome-wide association study (GWAS). To improve the calculation speed without changing the size of the TradPerm p-value, we developed a Monte Carlo permutation (MCPerm) method as an efficient alternative to TradPerm. Methods: MCPerm does not need to shuffle the original genotypes and phenotypes data. It uses Monte Carlo method, employs two-step hypergeometric distribution to generate the random number of genotypes (AA, Aa and aa) in cases and controls.
    Downloads: 0 This Week
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  • 11
    MuPuPriNT

    MuPuPriNT

    A primality/compositeness tester for different types of numbers.

    ...It is basic, yet full-featured, and offers several different testing methods for each type of number. MuPuPriNT is built on the GNU Multiple-Precision (GMP) integer + rational library, and is available for Windows, OS X, and Linux. Source code is available as well, and can be built on any machine with Qt installed. As of version 2.0, MuPuPriNT is built on the cross-platform Qt application framework. There are currently two versions: MuPuPriNT and MuPuPriNT Extended.
    Downloads: 0 This Week
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  • 12

    Hanoi in Basic

    The Famous Recursive Algorithm In Old-Fashioned BASIC

    ...In this version of BASIC, you use GOSUB to call a procedure, and there are no local variables. So I used arrays to allocate memory for stacks, from where the "local variables" are taken. From this code you can learn how recursion and functions with dynamic local variables work.
    Downloads: 0 This Week
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  • 13
    This utility, lingen, implements evolution of native machine code via linear genetic programming. The assembly level code uses a subset of assembly language which manipulates and performs calculations using the floating point unit (FPU) of the CPU.
    Downloads: 0 This Week
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  • 14
    The fast2armc program translates source code of a counter automata model for FAST(er) tool to the ARMC prolog syntax.
    Downloads: 0 This Week
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  • 15
    PTools is a set of useful tools written in Pascal. It includes: scientific calculator, archiver, text editor, remote adminitration and more. It is designed to be portable across operating systems, specially Java-based mobiles, Windows and Unixes.
    Downloads: 3 This Week
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  • 16
    M-S Lab

    M-S Lab

    Math-Statistics LABoratory

    M-S Lab is a free software for statistical computing and graphics. M-S Lab is available in two distributions: The built-in language support is implemented in "Own" version. And for users who like to code in Lua scripting language we made a "Lua" version. Both versions are available for free download in the Downloads page.
    Downloads: 0 This Week
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  • 17
    ShiVaSmiles

    ShiVaSmiles

    A slick interface to see various scale analysis algorithms in action.

    ...The main website is built as a wiki gathering info and examples on the various implemented algorithms. The combination of the application and its wiki intend to constitute a nice little pedagogic toolkit for multiscale analysis. Feel free to contribute code or wiki content !
    Downloads: 0 This Week
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  • 18

    Galois sub-hierarchy builder

    Visualize Galois sub-hierarchy of 2d matrix

    ..."Efficiently computing a linear extension of the sub-hierarchy of a Concept Lattice" by Anne Berry, Marianne Huchard, Ross M. McConnell, Alain Sigayret and Jeremy P. Spinrad. "Performances of Galois Sub-hierarchy-building algorithms" by Gabriela Arevalo, Anne Berry, Marianne Huchard, Guillaume Perrot and Alain Sigayret In you're in need of other GSH algorithms or their realizations in C++, you might want to investigate a project called Galicia on sourceforge. This program is free software and is licensed under GNU General Public License as published by the Free Software Foundation. ...
    Downloads: 0 This Week
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  • 19
    OptLib

    OptLib

    C nonlinear optimization library

    [PROJECT MIGRATED TO GIT-HUB] OptLib is a library of nonlinear optimization routines focused on the use of stochastic methods, including Simulated Annealing, Genetic Algorithms, and Monte Carlo. Routines are parallelized using MPI.
    Downloads: 0 This Week
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  • 20

    LIME

    LIME is a software tool for creating multiphysics simulation codes.

    ...LIME provides the key high-level software (written in C++), a well defi ned approach (with example templates), and interface requirements to enable the assembly of multiple physics codes into a single coupled-physics simulation code. To achieve its flexible lightweight design objectives, LIME 1.0 requires that some amount of customized software be written each time a new multiphysics application is created. Also, modest high-level revisions or modifications to most stand-alone physics codes may be required to meet interface requirements. Detailed descriptions of these requirements together with example cases are provided in a users guide.
    Downloads: 3 This Week
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  • 21
    aal

    aal

    The Advanced Algebraic Language.

    The Advanced Algebraic Language (AAL) is a very dynamic programming language designed to fill the void that has appeared between mainstream languages and algebra. As a result its main focus is ease of use for math problems. To download AAL check out the source code repository. There are versions available for windows and linux with both 32 and 64 bit native binaries: http://svn.code.sf.net/p/aal-lang/code/trunk/bin/
    Downloads: 0 This Week
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  • 22

    numerica

    Basic numerical algorithms in c++

    ...numerica implements some of the basic numerical algorithms about root-finding, interpolation, system of linear equations, integration, and ordinary differential equations. The aim is to be simple, code-readable and generic. New features of the recently approved c++11 are used.
    Downloads: 0 This Week
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  • 23
    fmatvec has been moved to GoogleCode: http://code.google.com/p/fmatvec/
    Downloads: 0 This Week
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  • 24
    mlpy

    mlpy

    Machine Learning Python

    mlpy is a Python module for Machine Learning built on top of NumPy/SciPy and of GSL. mlpy provides high-level functions and classes allowing, with few lines of code, the design of rich workflows for classification, regression, clustering and feature selection. mlpy is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License version 3. mlpy is available both for Python >=2.6 and Python 3.X.
    Downloads: 0 This Week
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  • 25
    A program for exploring complex functions, much like the now out-dated f(z). Domain colored plots of complex functions. Click evaluate. Uses reflection so you can code almost anything for your formula. All java. Please help.
    Downloads: 0 This Week
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