Search Results for "git:/git.code.sf.net/p/docfetcher/code" - Page 6
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Showing 245 open source projects for "git:/git.code.sf.net/p/docfetcher/code"
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A C library for big numbers. bign.tar.gz is the set of library files. Expand it wherever you want. bnstart.html is a beginners guide. buserdoc.html is definition and complete instructions. Everything works.
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GridPACK is a community-developed open-source collection of code for use in power systems research, analysis, and operation.
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The Systems Biology Ontology project (SBO) goal is to develop controlled vocabularies and ontologies tailored specifically for the kinds of problems being faced in Systems Biology, especially in the context of computational modeling. !!!! Important Announcement !!!! We have moved the curation and development of Systems Biology Ontology (SBO) to a git-hub repository https://github.com/EBI-BioModels/SBO. Hence, this SourceForge SBO project has also been retired. Please use the Git-Hub issue tracker https://github.com/EBI-BioModels/SBO/issues to request the addition of new terms.
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MathParser Java - Math Parser library
Mathematical Parser for Java
This project gives a mathematical parser for converting a simple string expression into a result which can be managed for using in other calculations, all in Java. Using a couple lines of code, you'll be able to parse complex arithmetic expressions efficiently. This library is powered by Dijkstra's Shuting-yard algorithm. The library has no dependencies with other external libraries. Dependency <dependency> <groupId>com.google.code.mathparser-java</groupId> <artifactId>mathparser-java</artifactId> <version>1.0.0</version> </dependency> Expressions supported (Mar/09/2013) - Arithmetic operations. ... -
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Robust Correlation Toolbox
Free Matlab toolbox to compute robust correlations
The Robust Correlation Toolbox is a free collection of Matlab functions allowing to visualize data in univariate and bivariate space, check assumptions of normality and homoscedasticity and compute Pearson's and Spearman's, percentage bend, and skipped correlations with bootstrapped confidence intervals - see http://www.frontiersin.org/Quantitative_Psychology_and_Measurement/10.3389/fpsyg.2012.00606/full -- code moved to https://github.com/CPernet/robustcorrtool -
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f2what
Lapack/quadprog QP for VBA/.Net/Java
F2what is an open source project to translate algorithmic fortran to a variety of languages (java, dotnet and VBA so far). It offers a Fortran77 parser with code transformations, variable disambiguation, and modular output to other programming languages. It also offers already translated versions of Lapack and quadprog to Java, .Net and VBA, to give access to SVD, LU, QR, Cholesky, eigenvalue decomposition, linear system solving and QP optimization in those three languages. -
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parFE is fully-parallel high-performance finite element code targeted to the modeling of trabecular bones in humans. It employs scalable multigrid solvers for efficient solutions on massively parallel computers.
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DyMMM
Dynamic Multispecies Metabolic Modeling framework
...The DyMMM framework was formerly known as the DMMM framework. Please use the following citation for bibliographical purposes: Zhuang, K., Izallalen, M., Mouser, P., Richter, H., Risso, C., Mahadevan, R., & Lovley, D. R. (2011). Genome-scale dynamic modeling of the competition between Rhodoferax and Geobacter in anoxic subsurface environments. The ISME journal. Zhuang, K., Ma, E., Lovley, D. R., & Mahadevan, R. (2012). The design of long-term effective uranium bioremediation strategy using a community metabolic model. ... -
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MCPerm: Monte Carlo SNP permutation
Monte Carlo permutation method for SNP multiple test correlation
...However, it relies on the original single nucleotide polymorphism (SNP) genotypes and phenotypes data to perform a large number of random shuffles, and thus it is computationally intensive, especially for genome-wide association study (GWAS). To improve the calculation speed without changing the size of the TradPerm p-value, we developed a Monte Carlo permutation (MCPerm) method as an efficient alternative to TradPerm. Methods: MCPerm does not need to shuffle the original genotypes and phenotypes data. It uses Monte Carlo method, employs two-step hypergeometric distribution to generate the random number of genotypes (AA, Aa and aa) in cases and controls. -
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MuPuPriNT
A primality/compositeness tester for different types of numbers.
...It is basic, yet full-featured, and offers several different testing methods for each type of number. MuPuPriNT is built on the GNU Multiple-Precision (GMP) integer + rational library, and is available for Windows, OS X, and Linux. Source code is available as well, and can be built on any machine with Qt installed. As of version 2.0, MuPuPriNT is built on the cross-platform Qt application framework. There are currently two versions: MuPuPriNT and MuPuPriNT Extended. -
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GUANO
GUANO - Graphical User interface for performing ANalysis Of variance
Free and open source standalone program capable of conducting between, within, and mixed analyses of variance (ANOVA). Provides a simple graphical user interface for specifying analyses and interaction plots (analyses performed by http://code.google.com/p/pyvttbl/). Features: - Capable of high order factorial designs (> 2 factors) - Within and mixed analyses of variance provide corrections for violations of sphericity (Huynh-Feldt, Greenhouse-Geisser, Box) - A variety of data transformations can be applied (log10, reciprocal, arcsine, square-root, and Windsor) - Generalized eta-squared measures of effect size - Post-hoc power analysis (should match G*Power) - Outputs include tables of estimated marginal means - Up to 4-way interaction plots with errorbars (png, svg) - Confidence intervals account for within-subject variability (where applicable; Loftus and Masson, 1994) - Non-proprietary HTML output files - Non-proprietary codebase Gotchas: - Assumes balanced designs -
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A new floating-point arithmetic which has uncertainty-tracking and undertainty-bounding capability, and algorithms to test this arithmetic. The code is in C++ (Visual Studio Express 2008)
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The fast2armc program translates source code of a counter automata model for FAST(er) tool to the ARMC prolog syntax.
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PTools is a set of useful tools written in Pascal. It includes: scientific calculator, archiver, text editor, remote adminitration and more. It is designed to be portable across operating systems, specially Java-based mobiles, Windows and Unixes.
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M-S Lab
Math-Statistics LABoratory
M-S Lab is a free software for statistical computing and graphics. M-S Lab is available in two distributions: The built-in language support is implemented in "Own" version. And for users who like to code in Lua scripting language we made a "Lua" version. Both versions are available for free download in the Downloads page. -
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ShiVaSmiles
A slick interface to see various scale analysis algorithms in action.
...The main website is built as a wiki gathering info and examples on the various implemented algorithms. The combination of the application and its wiki intend to constitute a nice little pedagogic toolkit for multiscale analysis. Feel free to contribute code or wiki content ! -
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Galois sub-hierarchy builder
Visualize Galois sub-hierarchy of 2d matrix
..."Efficiently computing a linear extension of the sub-hierarchy of a Concept Lattice" by Anne Berry, Marianne Huchard, Ross M. McConnell, Alain Sigayret and Jeremy P. Spinrad. "Performances of Galois Sub-hierarchy-building algorithms" by Gabriela Arevalo, Anne Berry, Marianne Huchard, Guillaume Perrot and Alain Sigayret In you're in need of other GSH algorithms or their realizations in C++, you might want to investigate a project called Galicia on sourceforge. This program is free software and is licensed under GNU General Public License as published by the Free Software Foundation. ... -
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OptLib
C nonlinear optimization library
[PROJECT MIGRATED TO GIT-HUB] OptLib is a library of nonlinear optimization routines focused on the use of stochastic methods, including Simulated Annealing, Genetic Algorithms, and Monte Carlo. Routines are parallelized using MPI. -
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LIME
LIME is a software tool for creating multiphysics simulation codes.
...LIME provides the key high-level software (written in C++), a well defi ned approach (with example templates), and interface requirements to enable the assembly of multiple physics codes into a single coupled-physics simulation code. To achieve its flexible lightweight design objectives, LIME 1.0 requires that some amount of customized software be written each time a new multiphysics application is created. Also, modest high-level revisions or modifications to most stand-alone physics codes may be required to meet interface requirements. Detailed descriptions of these requirements together with example cases are provided in a users guide. -
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aal
The Advanced Algebraic Language.
The Advanced Algebraic Language (AAL) is a very dynamic programming language designed to fill the void that has appeared between mainstream languages and algebra. As a result its main focus is ease of use for math problems. To download AAL check out the source code repository. There are versions available for windows and linux with both 32 and 64 bit native binaries: http://svn.code.sf.net/p/aal-lang/code/trunk/bin/ -
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Infinity.NET
Port of the GNU Scientific Library Special Functions module to .NET
This is the source code port of the Special Functions module from the GNU Scientific Library (GSL) to the .NET environment. The library includes implementation of the Airy functions, Bessel functions, Gamma related functions, etc. -
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numerica
Basic numerical algorithms in c++
...numerica implements some of the basic numerical algorithms about root-finding, interpolation, system of linear equations, integration, and ordinary differential equations. The aim is to be simple, code-readable and generic. New features of the recently approved c++11 are used. -
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mlpy
Machine Learning Python
mlpy is a Python module for Machine Learning built on top of NumPy/SciPy and of GSL. mlpy provides high-level functions and classes allowing, with few lines of code, the design of rich workflows for classification, regression, clustering and feature selection. mlpy is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License version 3. mlpy is available both for Python >=2.6 and Python 3.X. -
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A program for exploring complex functions, much like the now out-dated f(z). Domain colored plots of complex functions. Click evaluate. Uses reflection so you can code almost anything for your formula. All java. Please help.
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Lightweight modelling program in which you can create, try and adjust your control (not only) system. Kernel of this program is MBricks - cross-platform collection of bricks. Created in Math Bricks system can be implemented in one *.h file.
