Search Results for "git:/git.code.sf.net/p/docfetcher/code" - Page 28
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Showing 2027 open source projects for "git:/git.code.sf.net/p/docfetcher/code"
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The Apple Device Management and Security PlatformAchieve harmony across your Apple device fleet with Kandji's unmatched management and security capabilities.
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We help you deliver Virtual and Hybrid Events using our Award Winning end-to-end Event Management PlatformEventsAIR have been anticipating and responding to the ever-changing event industry needs for over 30 years, providing innovative solutions that empower event organizers to create successful events around the globe.
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1
PBSuite
Software for Long-Read Sequencing Data from PacBio
This currently hosts two projects created and maintained by Adam English. PBJelly - the genome upgrading tool. PBHoney - the structural variation discovery tool Both are contained within the PBSuite code found in downloads. ----- PBJelly ----- Read The Paper http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0047768 PBJelly is a highly automated pipeline that aligns long sequencing reads (such as PacBio RS reads or long 454 reads in fasta format) to high-confidence draft assembles. PBJelly fills or reduces as many captured gaps as possible to produce upgraded draft genomes. ----- PBHoney ----- Read The Paper http://www.biomedcentral.com/1471-2105/15/180/abstract PBHoney is an implementation of two variant-identification approaches designed to exploit the high mappability of long reads (i.e., greater than 10,000 bp). ... -
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PSICOV
The unofficial binary for PSICOV: Protein Sparse Inverse COVariance
PSICOV (Protein Sparse Inverse Covariance estimation program) is a coevoultion algorithm applied to very large (typically >=1000 sequences) multiple sequence alignments for precise protein structural contact prediction. This is the unofficial precompiled Windows binary for PSICOV compiled by Chengxin Zhang at Fudan University. The source code is copyrighted by David T. Jones, University College London. -
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Colibri - The ENVI / IDL Code Library
A collection of well documented ENVI / IDL algorithms and applications
...Classes are object based functionalities performing more specific tasks. Both common code and classes are the building blocks for the applications which perform well delineated tasks. All common code, classes and applications are well documented. The complete set of code and documentation are available to the remote sensing community. ENVI/IDL code developers and remote sensing researchers are requested to actively contribute to this ENVI/IDL Code Library in order to obtain a solid reference of user developed applications for the remote sensing community. -
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PressureEquipmentLibrary
Library for Pressure Equipment code
Java library for code over Pressure Equipment on European Directive or ASME BPVC -
IT Asset Management (ITAM) SoftwareDrowning in misplaced IT assets, compliance headaches, and shadow IT? Navigate to clarity with an intuitive IT Asset Management solution. Experience crisp visibility, effortless control, and unshakable security – all while freeing up your budget with optimized software licenses. The best part? It’s easy.
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5
F-Tracker3D
A software tool for tracking fluorescent cells in 3D
...Then, the 3D track of each cell is obtained analysing the z-stacks and looking for the z-plane with the maximum intensity value for the different x-y positions previously determined. F-Tracker3D is written in MATLAB (©, The MathWorks, Inc., Massachusetts, USA) and the source code is freely provided. Requirements: MATLAB 2015a and Image Processing Toolbox 9.2 or later versions. -
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Calculation of radiation view factors by adaptive integration. A cross-platform port of the public-domain code by George Walton.
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Explicit/Impicit Finite Element Program with linear/nonlinear, elastic/hyperelastic/hypoelastic/plastic/visco, contact,thermal, fluid capabilities. h/p refinements. Parallel/Distributed solvers available. No shell elements but has 2D beams, trusses.
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INTEGRATE: Calling gene fusions with exact fusion junctions and genomic breakpoints by combining RNA-Seq and WGS data. To download source code, reference manual and test case, please go to 'Files'. Also refer to 'Wiki' for details.
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Applications to support the efficient capture of data from natural science collections specimens (particularly entomological collections), by facilitating pre-capture of data reflecting the storage structure of the collection, imaging of the specimens to separate data capture from specimen handling, and community sourcing transcription of hand written label data. Designed and written by a team at the Museum of Comparative Zoology. Includes a PreCapture barcode application refactored from this code base with support from the US National Science Foundation ADBC TCN for New England Vascular Plants NSF #1208835 Precapture Application: http://doi.org/10.5281/zenodo.154176 Migrated to GitHub PreCaptureApp: https://github.com/MCZbase/PreCapture Desktop App https://github.com/MCZbase/DataShot_DesktopApp Web App components: https://github.com/MCZbase/datashot_ejb https://github.com/MCZbase/datashot_web https://github.com/MCZbase/datashot_ee
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Next-generation security awareness training. Built for AI email phishing, vishing, smishing, and deepfakes.Assess how your company's digital footprint can be leveraged by cybercriminals. Identify the most at-risk individuals using thousands of public data points and take steps to proactively defend them.
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10
CurvatureFilter
Curvature Filters are efficient solvers for Variational Models
These curvature filters were developed by Yuanhao Gong during his PhD studies. MC filter and TV filter are exactly the same as described in the paper. However, the GC filter is slightly modified. Please cite the following papers if you use a curvature filter in your work. Traditional solvers, such as gradient descent or Euler Lagrange Euqation, start at the total energy and use diffusion scheme to carry out the minimization. When the initial condition is the original image, the data fitting... -
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Project 2306 IDE Rad MacOS MCU DeveR
Electronic design and programming tools suite like Eagle, MpLab
Currently Only MacOS is Present, PreAlpha means not Ready to use, Application is provided Without Strict Garantee, License not OSI. All others platform Windows, Linux, HaikuOS STILL under TEST, Dummy "Hello world" is provided instead Project2306 IDE : Application pour la programmation de Microcontroleurs et d' Application Electronique Project2306 IDE : for All whom want to Create and Develop on Embed Platform Software as Programming Tools suite and PCB Design Planned... -
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Virtual Cell
Former home of the Virtual Cell platform (VCell), see http://vcell.org
This project and all source code has moved to GitHub, see https://github.com/virtualcell -
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Spglib is a C-library written for finding crystal symmetry. Symmetry operation, space group, etc, can be obtained using this symmetry finder. It is easy to include this library to your code. For more information, See, http://spglib.sourceforge.net/
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StarFactory
Astrophotography
An astronomical Open source Delphi project for : robotic telescope, autoguiding, astrophotography and advanced astronomical image processing. It is developing continuously by author. Some other astronomical test, ideas and source code => See my site for new informations (for amateur and Delphi programmers.) New: STAFImage : image process and blinkcomparator for astrophotographer Some other astronomical test, ideas and source code => See my site for new informations (for amateur and Delphi programers.) -
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MieConScat is a GUI/Console program for generating MIE SCATtering data as a table of cross sections. It can generate scattering cross sections over specified angular ranges and total absorption cross sections. It was initially developed to aid work with optical particle counters (OPC) especially when CONverting data between cross section and diameter space. These methods are described in Rosenberg et al. 2012, Particle sizing calibration with refractive index correction for light scattering...
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16
PB-sQF_BacterialTyping
Bacterial Typing from either assembled or raw short reads file
Probability Binning - signature Quadratic Form, PB-sQF, types unknown sequence to one of the 628 bacterial library genomes which gives the smallest test statistics thus most similar library strain. The input file is the k-mer counts of the unknown assembled genome sequence or raw short reads file in decimal format generated by KAnalyze developed by P. Audano et al. (https://sourceforge.net/projects/kanalyze/). The download included the library index, the library name and sample unknowns. -
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GNUSim8085 is a simulator and assembler for the Intel 8085 Microprocessor. For downloading latest release please head to the website - https://gnusim8085.github.io/ For source code - https://github.com/GNUSim8085/GNUSim8085
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MUMAL2
Multivariate analysis of MS/MS data using ML techniques
Program described in the paper: MUMAL2: Improving sensitivity in shotgun proteomics using cost sensitive artificial neural networks and a threshold selector algorithm, 2016. By Fabio R. Cerqueira; Adilson M. Ricardo; Alcione P. Oliveira; Armin Graber; Christian Baumgartner. -
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GBTIDL provides offline data reduction for spectral line data from the GBT, a single dish radio telescope. Although the GBTIDL code is open source, running it requires you to have your own IDL license and base package.
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Repast
The Repast Suite is a family of free agent-based modeling libraries.
The Repast Suite is a family of advanced, free, and open source agent-based modeling and simulation platforms that have been under continuous development for over 20 years. Current source code and releases are hosted on Github https://repast.github.io/ -
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OpenShoe
ZUPT aided INS software components for an embedded platform
...The work is a part of the research work carried out at the Signal Processing Lab, KTH Royal Institute of Technology, Stockholm, Sweden and the Statistical Signal Processing Lab, IISc, Bangalore, India. The initial work was primarily be carried out during the fall and winter of 2011-2012. Since then the code has been continuously updated. -
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Functy
Functy is a 3D graph drawing package that generates immediate results.
Note: The Functy and libsymbolic code has now moved to GitLab: https://gitlab.com/flypig/functy https://gitlab.com/flypig/libsymbolic This project has been left here for archival purposes. Functy is a 3D graph drawing package. It allows Cartesian, spherical and parametric curve functions to be plotted and altered quickly and easily. This immediacy and the vivid results promote fun exploration of 3D function. -
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Ship Lock Scheduling
Scheduling lockages at ship locks with several parallel lock chambers
...Solutions and performed computations can be displayed graphically. Besides, there is a framework for generating test instances and running these in parallel, as well as R/JGR code for statistical evaluation. Some tools for estimating the quality of calculated solutions will be further improved. Initially the software was developed within a project of TU Berlin regarding the Kiel Canal. See project wiki for conditions that should be met by applications. -
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CNCpad
CNC PAD, is a CNC program with syntax highlighting editor
CNC PAD, is a CNC program with syntax highlighting editor for professionals. This Publisher offers a simple and intuitive editing for G-CODE languages, Fanuc, Siemens, Heidenhain, Num mode, etc... CNC PAD includes many features that allow to maximize its production time and significantly decrease the number of input errors. Calculate and View : Target G1 G2 G3 operations Calculate and View : Drilling operations Calculate and View : Bolt Circle Calculations for points arranged equally spaced in a circle Part View Of more connection to the numerical control simulation program live to verify paths. ... -
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Quantum Wells, Wires and Dots
A set of tools for simulating semiconductor nanostructures.
This software accompanies the textbook "Quantum Wells, Wires and Dots" (4th Edition), Paul Harrison and Alex Valavanis, Wiley, Chichester (2015). It is adapted (by the same authors) from code that was originally supplied on a CD with the first edition of the book [1] and is now made available under the GPL3 license. In brief, we encourage everyone to use the software in your studies and research, to study and modify the source-code and to share it widely. However, you are not permitted to include any of our code in a closed-source project.
