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4-Dimensional Cell Simulator (4DiCeS) is a framework on hybrid (stochastic and deterministic) modeling and simulation of (whole) cell environments in 4D. The framework may incorporate any reaction and diffusion algorithms applicable in a 4D grid layout.
splitsmb is a standalone application for calculating topological convergence diagnostics on MrBayes tree-output files (unrooted only at this point). It calculates the average- and maximum standard deviations of partition frequencies between runs.
MatrixGen is a Bioinformatics application used to generate scoring matrices from analysis of aligned Amino Acid and DNA data sets. These matrices can then be used by Clustal to generate more accurate alignments. Based upon the Henikoff BLOSUM method.
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The SESAME (Simulation of Embedded System Architectures for Multilevel Exploration) software system is an embedded system co-simulation environment and research tool which implements the ideas of the SESAME project at the University of Amsterdam.
Berenice is 3D visualasion tool for electronic printed boards design. It can take design made in Eagle or any other pcb tool and visualise, rotate, zoom, move and pick in nearly real world view.
This program calcules a any Earthing Eletrical System: the voltage, grounding resistence and step voltage. (Programa que calcula num sistema de aterramento: a tensao em qualquer ponto do solo, a resistencia do aterramento e a tensao de passo)
wxMorlet implements the new algorithm (see "Documentation") for the computation of the continuous wavelet transform with the Morlet wavelet. wxMorlet calculates it as a numerical solution of the proper PDE and represents the results in a graphical form
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Easy to use remote controllable monitoring system with analysis funtionalities. It is splitted into data acquisition (monitoring agent) and visualisation/analysis (evaluation station), communicating via xml-rpc (using ulxmlrpcpp).
A graphical interface for solving exterior ballistics problems, based on the excellent GNU exterior ballistics library. This software generates valid 3-DOF solutions to small arms trajectories, including wind and atmospheric corrections.
epiPATH is a platform to store and analyze evolutionary, population and epidemiological data from infectious diseases. It is designed to aid users in daily work with data generated in sequencing projects as well as clinical and epidemiological data.
Tecplot add-on for editing auxiliary data from within Tecplot. Note that an updated version of this add-on is now incorporated into the main Tecplot distribution.
This project is for converting PCB RS274X gerber files to RS274NGC Gcode files. Currently this software is in the early development stages. Currently working to simplify the program and improve reliability.
Analyze 7.5 (img/hdr) files are used by many medical imaging packages for data export. This small script converts these Analyze 7.5 image files to comma delimited text files, which are suitable for down stream applications.
Erode is a comprehensive layer over ODE (Open Dynamics Engine) library which allow you to easily create ODE world and visualize them (through Qt widget). It also offers convenient functions to control the appearance, parameters etc.
Windowed walking robot simulation system (based on Qt v.4 library). Allows projecting kinematic model of robot, planning robot movement, and movement simulation with gait parameters visualization. Program stores all data in XML files.
sbmlop is a command-line utility to create, view and manipulate SBML (the Systems Biology Markup Language). It is ideally suited for operating on large batches of SBML files, and can extract and modify information using regular expressions.
This set of C++ classes allows the user to load data from custom Affymetrix microarrays. This is a good platform for new method development and it contains several common normalization algorithms.
Open Screening Environment is a open source system for management of High Throughput Screening related experiments. The platform consists of new research tools that will enhance significantly management and analysis of HTS data. More information can be f
MatPlot is a win32 program whose primary aim is to plot data, that is to render an interactive 2-d graphical representation of a set of arrays of numbers.It comes to facilitate a typical task of engineering: view and analyze of a set of collected values.