Search Results for "c:\program files\micronetics\msmws\program\" - Page 20
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Showing 1783 open source projects for "c:\program files\micronetics\msmws\program\"
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MUMAL2
Multivariate analysis of MS/MS data using ML techniques
Program described in the paper: MUMAL2: Improving sensitivity in shotgun proteomics using cost sensitive artificial neural networks and a threshold selector algorithm, 2016. By Fabio R. Cerqueira; Adilson M. Ricardo; Alcione P. Oliveira; Armin Graber; Christian Baumgartner. -
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PriorityPruner is a software program which can prune a list of SNPs that are in high linkage disequilibrium (LD) with other SNPs in the list, while preferentially keeping SNPs of higher priority (e.g., the most significant SNPs in a genome-wide association study).
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VCF Explorer
A desktop application for analyzing whole genome VCF files
he decreasing cost high-throughput technologies led to a number of sequencing projects consisting thousands of whole genomes. The paradigm shift from exome to whole genome brings a significant increase in the size of output files. Most of the existing tools which are developed to analyze exome files are not adequate for large VCF files produced by whole genome studies. In this work we present VCF-Explorer, a variant analysis software capable of handling large files. Efficient memory management of the program and the elimination of preliminary parsing step enable to carry out the analysis at ordinary computers. ... -
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LibOpenCIF
A library to load CIF (Caltech Intermediate Form) files.
LibOpenCIF is an open source library for GNU/Linux that bring to the user basic loading of CIF (Caltech Intermediate Form) files. The library is writed and intented to be used in C++. -
Transforming NetOps Through No-Code Network Automation - NetBrainNetBrain, founded in 2004, provides a powerful no-code automation platform for hybrid network observability, allowing organizations to enhance their operational efficiency through automated workflows. The platform applies automation across three key workflows: troubleshooting, change management, and assessment.
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PyVib2 is a program for analyzing vibrational motion and vibrational spectra. It is an open source "all-in-one" solution for scientists working in the field of vibrational spectroscopy (Raman and IR) and vibrational optical activity (ROA and VCD).
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erf
error function and related functions in pure standard Fortran 2008
...The calculation is based on calculating w(z), the Faddeyeva (plasma dispersion) function. Two algorithms are implemented: TOMS 680 and 916, http://www.netlib.org/toms/. The simple test program calculates values in the Abramowitz, Stegun. -
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hexcompare
console-mode visual binary diff
hexcompare is a curses-based utility to compare and identify differences between two binary files. These differences are then represented visually with an interactive block diagram. -
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trj_cavity finds protein cavities throughout Molecular Dynamics (MD) simulation trajectories. The program works with files in PDB format, but it also can read/generate GROMACS compatible formats such as XTC. The same project can be compiled as a GROMACS tool or as a standalone version. Installation instructions are provided in the INSTALL file of the project and in https://sourceforge.net/p/trjcavity/wiki/Home/#ffad If you need support using this tool (or report bugs), please post it in the discussion forum. ...
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C-Tools
Input file preparation tool for DFT codes
This application can produce input files of various applications for density functional theory (DFT) calculations via user-friendly parameter adjustment using three-dimensional computer graphics (3DCG) and graphical user interfaces (GUI). Input-file conversion between different applications is also possible. Now C-Tools supports the three file formats for DFT codes, xTAPP, OpenMX, RSDFT, VASP and Quantum ESPRESSO(PWscf). -
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ooPorter
A Porter stemming or stemmer algorithm coded in ooRexx
...Input to the program is a textfile with words to be stemmed, one per line. Output from the program ends up in the terminal window (standard out) and may be redirected to an output file. Syntax: rexx ooPorter myInputfile.txt > myOutputfile.txt The program only works for stemming English words. The source code is distributed under a free beer license; you are free to use the ooRexx source code as you please and no restrictions whatsoever apply as far as the type of beer is involved. -
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Marcion
The study environment of ancient languages (Coptic, Greek, Latin)
Marcion is a software forming a study environment of ancient languages (esp. Coptic, Greek, Latin) and providing many tools and resources (dictionaties, grammars, texts). Although Marcion is focused on to study the gnosticism and early christianity, it is an universal library working with various file formats and allowing to collect, organize and backup texts of any kind. Overview of gnostic sources in Coptic language delivered with Marcion: Nag Hammadi Library; Berlin Codex; Codex... -
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A tool for extracting and preprocessing spectral count data for label-free quantitative proteomic analysis. This program is designed to be used with the Trans-Proteomic Pipeline (TPP).
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3D Heat advection C code
A C Program code to solve for Heat advection in 3D Cartesian grid.
Type - 3D Grid - Structured Cartesian Case - Heat advection Method - Finite Volume Method Approach - Flux based Accuracy - First order Scheme - Explicit, QUICK Temporal - Unsteady Parallelized - No Inputs: [ Length of domain (LX,LY,LZ) Time step - DT Material properties - Conductivity (k or kk) Density - (rho) Heat capacity - (cp) Boundary condition and Initial condition. ] Setup : The left, top and inside plane boundary is at 100 C and the right, bottom and outside plane... -
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2D Heat advection C code
A C Program code to solve for Heat advection in 2D Cartesian grid.
Type - 2D Grid - Structured Cartesian Case - Heat advection Method - Finite Volume Method Approach - Flux based Accuracy - First order Scheme - Explicit, QUICK Temporal - Unsteady Parallelized - No Inputs: [ Length of domain (LX,LY) Time step - DT Material properties - Conductivity (k or kk) Density - (rho) Heat capacity - (cp) Boundary condition and Initial condition. ] Setup : The left and top boundary is at 100 C and the right and bottom boundary is at 0 C. The flow is... -
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3D Heat convection C code
A C Program code to solve for Heat convection in 3D Cartesian grid.
Type - 3D Grid - Structured Cartesian Case - Heat convection Method - Finite Volume Method Approach - Flux based Accuracy - First order Scheme - Explicit, QUICK Temporal - Unsteady Parallelized - No Inputs: [ Length of domain (LX,LY) Time step - DT Material properties - Conductivity (k or kk) Density - (rho) Heat capacity - (cp) Boundary condition and Initial condition. ] Setup : The top, bottom, front and back boundaries are heated to 100 C. The left boundary is inlet... -
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2D Heat convection C code
A C Program code to solve for Heat convection in 2D Cartesian grid.
Type - 2D Grid - Structured Cartesian Case - Heat convection Method - Finite Volume Method Approach - Flux based Accuracy - First order Scheme - Explicit, QUICK Temporal - Unsteady Parallelized - No Inputs: [ Length of domain (LX,LY) Time step - DT Material properties - Conductivity (k or kk) Density - (rho) Heat capacity - (cp) Boundary condition and Initial condition. ] Setup : The top and bottom boundaries are heated to 100 C. The left boundary is inlet (Velocity = 1m/s... -
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BioC
We describe a simple XML format to share text documents and annotation
A minimalist approach to share text documents and data annotations. Allows a large number of different annotations to be represented. Project files contain: - simple code to hold/read/write data and perform sample processing. - BioC-formatted corpora - BioC tools that work with BioC corpora BioC goals - simplicity - interoperability - broad use - reuse There should be little investment required to learn to use a format or a software module to process that format. We are... -
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Visualization of Protein-Ligand Graphs
Compute protein graphs. Moved to https://github.com/MolBIFFM/PTGLtools
NOTE: Project moved to https://github.com/MolBIFFM/PTGLtools. The Visualization of Protein-Ligand Graphs (VPLG) software package computes and visualizes protein graphs. It works on the super-secondary structure level and uses the atom coordinates from PDB files and the SSE assignments of the DSSP algorithm. VPLG is command line software. If you do not like typing commands, try our PTGL web server: http://ptgl.uni-frankfurt.de/ -
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XASTIR
Multiplatform Ham Radio APRS and Mapping Program
NOTE: Code commits are FROZEN on SourceForge: New code is now at <http://github.com/Xastir/Xastir>. Real-time tracking & messaging of stations via radio/internet APRS data streams, w/125 map formats supported. Linux/FreeBSD/Solaris/MacOSX/Windows in any of 7 languages. Can also be used for mobile mapping w/GPS. MAILING LISTS ARE AT: PROJECT->WEB SITE. -
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program.MODULAR
MODULAR: Autonomous Computation of Modularity
...The software is implemented in C language and it uses the igraph library for complex network research. -
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Nova
Astronomical Image Solver with Telescope Pointing
Nova is a simple astronomical image solver. It can currently open FITS files and identify some objects against star catalog objects. -
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LBM3fm
LBM3fm - Lattice Boltzmann method for film flow modelling
This program provides the moment method boundary condition treatment for multi-phase flow modelling with lattice Boltzmann methods. For feedback, leave a review, leave a comment on the discussion page or send me a private mail. -
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Command line calculator and tool for manipulating files and arrays of integer and floating point values.
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2d Heat advection Parallelized
MPI based Parallelized C Program code to solve for 2D heat advection.
Type - 2D Grid - Structured Cartesian Case - Heat advection Method - Finite Volume Method Approach - Flux based Accuracy - First order Scheme - Explicit, QUICK Temporal - Unsteady Parallelized - MPI (for cluster environment) Inputs: [ Length of domain (LX,LY) Time step - DT Material properties - Conductivity (k or kk) Density - (rho) Heat capacity - (cp) Boundary condition and Initial condition. ] Setup: The left and top edges are heated to 100 C and the right and bottom...
