Search Results for "git:/git.code.sf.net/p/docfetcher/code" - Page 9

Showing 1058 open source projects for "git:/git.code.sf.net/p/docfetcher/code"

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  • 1

    GelJ

    GelJ is a Java program for the analysis of DNA gel fingerprints images

    ...GelJ – a tool for analyzing DNA fingerprint gel images. BMC Bioinformatics 2015, 16:270 http://doi.org/10.1186/s12859-015-0703-0. You can see more information about GelJ in https://sourceforge.net/p/gelj/wiki/Home/ Several videos explaining the use of GelJ are available in https://sourceforge.net/p/gelj/wiki/Videos/ Please address any question or comment to joheras at gmail.com
    Downloads: 40 This Week
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  • 2

    dualword-rt

    measuring bimanual simple visual reaction time

    measuring bimanual simple visual reaction time Source code: http://github.com/dualword/dualword-rt
    Downloads: 0 This Week
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  • 3
    FCSalyzer

    FCSalyzer

    FCSalyzer is a free program for analysing flow cytometry data

    ...Impressum / Legal Notice Sven Mostböck Wien Austria e-mail: sven_mostboeck@users.sourceforge.net second contact option: use the open discussion on the FCSalyzer sourceforge page: http://sourceforge.net/p/fcsalyzer/discussion/
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    Downloads: 52 This Week
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  • 4
    Transistor

    Transistor

    Exploiting Mox Software "Bipolar Transistors" database

    ...As on many download websites it was mentioned as open sources (but no source available) I decided to rebuild if almost from scratch. As a transistor database may be useful i decide to share what I've done. It has been written in Purebasic because IDE is free till 800 lines of code written, and mainly because it's very portable with a lot of library embedded.
    Downloads: 0 This Week
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  • 5
    Fast and efficient 3D pharmacophore search developed by the Camacho Lab (http://smoothdock.ccbb.pitt.edu) at the University of Pittsburgh. Source code is available through the svn repository.
    Downloads: 12 This Week
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  • 6

    MToolBox

    A bioinformatics pipeline to analyze mtDNA from NGS data

    ...MToolBox provides also a Variant Call Format file (version 4.0) featuring, for the first time, allele-specific heteroplasmy. Please, check out the most recent updates of the source code with the Github repository of MToolBox: https://github.com/mitoNGS/MToolBox or visit the Web version of MToolBox @ MSeqDR: https://mseqdr.org/mtoolbox.php
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    Downloads: 16 This Week
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  • 7
    Reproducible-research

    Reproducible-research

    A Reproducible Data Analysis Workflow with R Markdown, Git, Make, etc.

    ...The workflow leverages established tools and practices from software engineering. It combines the benefits of various open-source software tools including R Markdown, Git, Make, and Docker, whose interplay ensures seamless integration of version management, dynamic report generation conforming to various journal styles, and full cross-platform and long-term computational reproducibility. The workflow ensures meeting the primary goals that 1) the reporting of statistical results is consistent with the actual statistical results (dynamic report generation), 2) the analysis exactly reproduces at a later point in time even if the computing platform or software is changed (computational reproducibility), and 3) changes at any time (during development and post-publication) are tracked, tagged, and documented while earlier versions of both data and code remain accessible.
    Downloads: 0 This Week
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  • 8

    lpsolve

    Mixed Integer Linear Programming (MILP) solver.

    Mixed Integer Linear Programming (MILP) solver lp_solve solves pure linear, (mixed) integer/binary, semi-cont and special ordered sets (SOS) models.lp_solve is written in ANSI C and can be compiled on many different platforms like Linux and WINDOWS This project is moved to github: https://lp-solve.github.io/
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    Downloads: 1,885 This Week
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  • 9
    DigiOz .NET Portal

    DigiOz .NET Portal

    ASP.NET MVC Based Portal CMS System to Create an Instant Website

    DigiOz .NET Portal is a FREE web based portal CMS system written in ASP.NET MVC 5 in C# which uses a Microsoft SQL Database to allows webmasters to setup and customize an instant website for either business or personal use. List of Technologies used: - ASP.NET MVC 5 - Microsoft SQL Server - Bootstrap - HTML 5 - jQuery Demo Site: http://digioznetportal.digioz.net/ Source Code: https://sourceforge.net/p/digioznetportal/codenew/ci/master/tree/ Installation Instructions: https://sourceforge.net/p/digioznetportal/wiki/Home/ Help Wanted: If you are a developer, and wish to join the project, please email us at support@digioz.com.
    Downloads: 0 This Week
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  • 10
    XOR Tree Generator
    Program for creating Verilog synthesizable XOR trees for high performance designs. Supports creation of Hamming Code (ECC) generators, checkers, and GF2 Multipliers.
    Downloads: 0 This Week
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  • 11
    dsam
    The Development System for Auditory Modelling (DSAM) is a computational library designed specifically for producing simulations of the auditory system. It brings together many established auditory models within a flexible programming platform.
    Downloads: 0 This Week
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  • 12
    Robotics Toolbox for MATLAB

    Robotics Toolbox for MATLAB

    Robotics Toolbox for MATLAB

    This toolbox brings robotics-specific functionality to MATLAB, exploiting the native capabilities of MATLAB (linear algebra, portability, graphics). The Toolbox uses a very general method of representing the kinematics and dynamics of serial-link manipulators as MATLAB® objects – robot objects can be created by the user for any serial-link manipulator and a number of examples are provided for well-known robots from Kinova, Universal Robotics, Rethink as well as classical robots such as the...
    Downloads: 5 This Week
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  • 13
    fas2svg

    fas2svg

    Visualize genetic code structure from fasta file.

    Generate svg file from fasta file.
    Downloads: 0 This Week
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  • 14
    Quadrotor

    Quadrotor

    Quadrotor control, path planning and trajectory optimization

    This MATLAB-based repository contains implementations of quadrotor control systems, path planning, and trajectory optimization algorithms developed as part of an advanced robotics course at the University of Pennsylvania. It includes PD controllers, path planning via Dijkstra and A* algorithms, and trajectory optimization (minimum snap/acceleration). Run code: change trajectories in file control/runsim.m and run. See quadrotor_dynamics.pdf for dynamic modeling of the quadrotor. See control/controller.m for implementation of the PD controller. Visualization below. Desired (blue) vs Actual (red).
    Downloads: 0 This Week
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  • 15
    OzGIS free open-source  mapping system

    OzGIS free open-source mapping system

    Analysis and display of Census, business, government attribute data

    ...The system can be used to to support management decisions associated with, for example, government planning, marketing, sales, site and personnel location, advertising and research. Systems for Windows, Mac and Ubuntu, source code, sample data files and manuals are included. DOWNLOAD to your Downloads directory and unzip to Downloads/OzGIS ; see the Files tab for installation instructions. See the installation manual or "OzGIS Installation" Youtube video for help with getting started. I am unable to show OzGIS to you, so suggest that you search for "OzGIS lloyd" on Youtube for demonstration videos or "OzGIS" on Pinterest for example maps. ...
    Downloads: 1 This Week
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  • 16
    C-squares

    C-squares

    Concise spatial query and representation system (c-squares)

    C-squares is an easily implemented method for storage, querying and display of spatial data locations, based on a hierarchical, grid-based representation of the Earth' surface. Source code for encoding, decoding, mapping, etc. is provided via this site. Additional support is available by contacting the system developer, Tony.Rees@marinespecies.org; see also the c-squares home page at http://www.cmar.csiro.au/csquares/ .
    Downloads: 0 This Week
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  • 17
    SAR Synthetic Aperture Radar

    SAR Synthetic Aperture Radar

    Collection of MATLAB codes, simulations, and summaries

    This repository is a collection of MATLAB codes, simulations, and summaries related to Synthetic Aperture Radar (SAR), InSAR, and PolSAR. The author compiled implementations of classic SAR imaging algorithms (e.g. Range-Doppler (RD) algorithm, Chirp Scaling (CS) algorithm), synthetic scenes, InSAR (interferometric) simulation including multiple terrain types (flat, conical), and polarization calibration techniques (Whitt, PARC, Quegan, Ainsworth). The readme states that these were...
    Downloads: 0 This Week
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  • 18
    ebfformat

    ebfformat

    An Efficient Binary data Format

    ...A program called ebftkpy which has a set of utility functions to work with the .ebf files , e.g., viewing the contents and getting a summary, is also provided. The EBF specification is designed to be concise and easy to understand to make it easier for others to write their own code if needed. It is also designed to simplify the programming of input output routines in different programming languages. In a nutshell an EBF file is a collection of data objects. Each data object is specified by a unique name and a single file can have multiple data objects. Each data object is preceded by a meta-data or header which describes the binary data associated with it. ...
    Downloads: 1 This Week
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  • 19
    Quadric

    Quadric

    Application for simple base-2 binary to base-4 DNA-code conversion

    Quadric is an opensource file converter created by the Jomcraft Network development team. In it's core functionality this small utility can transform base-2 binary files into base-4 DNA-coded human-legible ASCII-files.
    Downloads: 1 This Week
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  • 20
    gsasnp2

    gsasnp2

    PubMed ID: 29562348 / DOI: 10.1093/nar/gky175

    * GSA-SNP2 is a successor of GSA-SNP (Nam et al. 2010, NAR web server issue). GSA-SNP2 accepts human GWAS summary data (rs numbers, p-values) or gene-wise p-values and outputs pathway genesets ‘enriched’ with genes associated with the given phenotype. It also provides both local and global protein interaction networks in the associated pathways. * Article: SYoon, HCTNguyen, YJYoo, JKim, BBaik, SKim, JKim, SKim, DNam, "Efficient pathway enrichment and network analysis of GWAS summary data using GSA-SNP2", Nucleic Acids Research, Vol. 46(10), e60(2018)...
    Downloads: 0 This Week
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  • 21
    Rainflow

    Rainflow

    Fast rainflow counting written in C (C99)

    ..."Standard Practices for Cycle Counting in Fatigue Analysis", West Conshohocken, PA: ASTM International, 2011. [2] [https://community.plm.automation.siemens.com/t5/Testing-Knowledge-Base/Rainflow-Counting/ta-p/383093]
    Downloads: 5 This Week
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  • 22

    COHCAP

    City of Hope CpG Island Analysis Pipeline

    ...Please see the GitHub version: https://github.com/cwarden45/COHCAP This was the source repository for the Bioconductor version, with some changes after the decision to only provide the code through GitHub. 2) In addition to the original NAR paper, please see the following links: Benchmarks: http://www.nature.com/protocolexchange/protocols/2965#/introduction Protocol Exchange Files: http://sourceforge.net/projects/cohcap/files/Protocol_Exchange_Example.zip 3) Custom Annotation Files (including EPIC Array): https://sourceforge.net/projects/cohcap/files/additional_Bioconductor_annotations.zip/download
    Downloads: 0 This Week
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  • 23
    Programmer's library for random numbers. Also random number generator testing code. Intended for simulation, games and "Monte-Carlo" algorithms.
    Downloads: 3 This Week
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  • 24
    Python4Proteomics Course

    Python4Proteomics Course

    Python course for Proteomics analysis

    Python course (in Spanish) for Proteomics analysis using basically Jupyter NoteBooks. For more information, you can have a look at the readme.md file in the source code tree: https://sourceforge.net/p/lp-csic-uab/p4p/code/ci/default/tree/readme.md
    Downloads: 0 This Week
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  • 25
    MATS is a computational tool to detect differential alternative splicing events from RNA-Seq data. The statistical model of MATS calculates the P-value and false discovery rate that the difference in the isoform ratio of a gene between two conditions exceeds a given user-defined threshold. From the RNA-Seq data, MATS can automatically detect and analyze alternative splicing events corresponding to all major types of alternative splicing patterns. MATS handles replicate RNA-Seq data from both paired and unpaired study design. ...
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    Downloads: 17 This Week
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