Search Results for "git:/git.code.sf.net/p/docfetcher/code" - Page 3

This is a Java-based project for complex event extraction from text and co-reference resolution. Currently the code can read BioNLP shared task format (http://2011.bionlp-st.org/) and i2b2 Natural Language Processing for Clinical Data shared task format (https://www.i2b2.org/NLP/DataSets/Main.php). Event extraction includes finding events and the parameters for an event in a text. The method is based on SVM but other ML algorithms can be adopted.

miRDeep-P,miRDP for short, is a computational tool for analyzing the microRNA (miRNA) transcriptome in plants.

A Generalized Combinatorial Approach for Detecting Gene-by-Gene and Gene-by-Environment Interactions

The Princeton Protein Orthology Database (P-POD), developed by the Genome Databases Group at Princeton, computes and displays families of orthologs between multiple organisms.

Parsers for biological data based on scanner generators like Flex (C), Re2c(C), Jflex (Java) and Ifickle (Tcl). This scanner generators are providing easier maintainance, development and higher speed than hand written scanners. Scanner output is SQL.

The Perl 3D-extension of MFPic LaTeX package aimed to high quality draw of spatial objects, such as vectors, curves, bounded surfaces.

Perl code scafflod for the automatic execution of main Next Generation Sequencing data processing and analysis.

Common code developed by researchers in the Edwards Bioinformatics Group at SDSU. This code is free for everyone to use. It is our base code that we provide on an as-is basis. Please let us know if you use the code or have questions/comments

DEPRECATED PROJECT! SolexaTools is becoming the SeqWare project (http://seqware.sourceforge.net) to better reflect its expanded sequencer support. Please go to this project page for code and documentation.

Tracetuner is a tool for base and quality calling of trace files from DNA sequencing instruments. Originally developed by Paracel, a Celera Business, this code base was released as open source in 2006. TraceTuner was used by Celera to call 30+ million reads from both Drosophila and human genome sequencing projects. In 2000, Applied Biosystems bundled TraceTuner with ABI3700 Genome Analyzers and shipped it to the customers of these capillary electrophoresis sequencers. Later versions of TraceTuner, which support mixed base calling, have been used by the research community, the private biotech sector, and the U.S. government as components of different variant detection, genotyping and forensic software applications (e.g. ...

NDAD is the UK National Digital Archive of Datasets. This project contains the source code for the bespoke software which drives the public website and many aspects of the data curation/archiving process.

Convert time sequence data to C code which can be compiled and executed to generate data for output to hardware.

...It allows users to store and organise their links and scholarly references online, and can automatically import bibliographic data from online archives. This project hosts the source code for Connotea.

This program converts calculator-style ASCII math notation (the same that ASCIIMathML uses) to Spanish Braille mathematics notation (not Nemeth Code).

blat(mat) is a Braille to print translator for maths. It takes a Spanish Six-dot Mathematical Braille (not Nemeth Code) text and converts it to an HTML file ready to be translated into XHTML+MathML by ASCIIMathML (javascript).

AutoPrime allows to rapidly design primers for real-time PCR measurement of eukaryotic expression. By connecting to the EnsEMBL database gene structure information is used to find primers spanning exon borders. This way only expressed sequences are captured. Additionally mispriming on repetitive regions can be avoided using information from RepBase.

Comprehensive & high performance data distribution &transformation system. Features a simple, user-friendly event driven scripting interface transparently generates & execs highly efficient Perl/C code. Uses:ETL,datawarehousing,statistics,data-cleansing.

...The database software is intended to be of general use and usage of our software by other similar projects is encouraged. Thanks to the Saccharomyces Genome Database (SGD) for lots of code.

Recon-Calc is a source code feature location tool based on the Software Reconnaissance technique. It allows you to name features of your system and then, based on coverage profiles gathered, you can find where they are implemented in the source code.

yaucp, Yet another uController Project. Is a set of tools and source of code and information for developing for the AVR families of microcontrollers under Linux using only GPL-compatible tools, released under the GPL.

OSIOSS (Open Source Integrated Observing System Software) is a collection of code which can be used for geospatial observing systems merging data collection, management and products solutions with ocean observing systems (OOS) as an initial focus.

This project enables a transparent integration of C/C++ and Java (and other languages such as C#, php...) in Eclipse. The project includes JQuantlib. sKWash makes use of swig. See home page for more info.

Mister Model is a code generation system. It takes a UML model expressed as XMI and generates source code specifically designed to work in a cross-platform web service environment. It fixes the legendary 'Serialization Failed' messages in web services

Verilator converts synthesizable Verilog HDL modules into SystemC modules. This enables users with Verilog code to have a publicly available co-simulation environment. For all information, see http://www.veripool.com/verilator.html.

A completely portable C++ library, to provide a standard set of classes similar to Java Common API. It's highly efficient and it follows the Embedded C++ Standard. It's FREE (LGPL licensed).