Showing 20 open source projects for "pedigree"

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  • 1
    Gramps

    Gramps

    Gramps, the open source genealogy program

    Gramps is a genealogy program for Linux, Windows, Mac, and FreeBSD that allows you to easily build and keep track of your family tree. It supports the GEDCOM standard, allows fine grained privacy controls and can generate many different types of reports (descendant trees, graphs, connection diagrams, ....)
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    Downloads: 532 This Week
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  • 2
    GEDKeeper

    GEDKeeper

    GEDKeeper - opensource and crossplatform genealogy management program

    GEDKeeper program is developed for work with personal genealogical database. The program is designed for extremely simple and intuitive interface. The program is very easy to install on the computer, fully supports the GEDCOM format, has no restrictions on the number of persons and generations, allows you to generate pedigrees, building several tree species, as well as print and save their images, provides fast navigation, filtering, searching and adding multimedia materials. In addition...
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    Downloads: 260 This Week
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  • 3

    Inzuchtrechner

    Simple tool to calculate the coefficient of inbreeding

    Inzuchtrechner calculates the coefficient of inbreeding using the formula of Sewall-Wright. 4 or 5 generations can be entered in a pedigree. The pedigree can be saved as a file, reloaded, changed and so on.
    Downloads: 0 This Week
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  • 4
    Trails

    Trails

    Modern Web Application Framework for Node.js.

    Trails is a modern, community-driven web application framework for Node.js. It builds on the pedigree of Rails and Grails to accelerate development by adhering to a straightforward, convention-based, API-driven design philosophy. Trails uses Yeoman to generate scaffolding for new applications and to create resources inside the application. Trailpacks extend the framework's capabilities and allow developers to leverage existing ecosystem tools through a simple and well-defined API. ...
    Downloads: 1 This Week
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  • 5

    Pathway-PDT

    Pathway-PDT: A Flexible Pathway Analysis Tool for Nuclear Families

    ...Although many pathway analysis tools have been developed for case-control study, there is no tool that can use all information from raw genotypes in general nuclear families. We developed the Pathway-PDT, which uses the framework of Pedigree Disequilibrium Test (PDT) for general family data, to perform pathway analysis. Availability and implementation: Pathway-PDT is implemented in C++ with POSIX threads (pthreads). Binaries (Windows) and source codes with makefile (Linux) are available. Contact: rchung@nhri.org.tw Citation: Yo Son Park, Michael Schmidt, Eden R. ...
    Downloads: 0 This Week
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  • 6

    jeneo

    WISIWIG pedigree tree editor

    A WISIWIG pedigree tree editor written on python. Jeneo allow you to create your pedigree tree visually, add pedigree links (child) and (i need that feature first off all - in fact that is why a i've written this app) add photos to your relatives. Jeneo home page has moved to bitbucket. Please visit jeneo wiki at https://bitbucket.org/legeyda/jeneo/wiki/jeneo.en.
    Downloads: 0 This Week
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  • 7
    PRIMUS

    PRIMUS

    Pedigree Reconstruction and Identification of a Maximum Unrelated Set

    NEW: Download new version with Pedigree Reconstruction at primus.gs.washington.edu This versions is outdated and incomplete. Please visit the new website for the complete version of PRIMUS. We present a method adapted from graph theory that always identifies the maximum set of unrelated individuals in any dataset, and allows weighting parameters to be utilized in unrelated sample selection.
    Downloads: 0 This Week
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  • 8
    Pigeon Planner

    Pigeon Planner

    Organise and manage your pigeons

    Pigeon Planner aims to be a simple to use pigeon database. Add, edit, remove pigeons and view their details such as name, image, sex, colour, pedigree, relatives and results in the user-friendly interface.
    Downloads: 2 This Week
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  • 9
    mapgraph

    mapgraph

    Massively Parallel Graph processing on GPUs -- now part of Blazegraph

    Mapgraph is SYSTAP’s disruptive new technology to exploit the main memory bandwidth advantages of GPUs. The early work was co-developed with the University of Utah SCI Institute and has its pedigree in the UINTAH software running on over 750M cores on the TITAN Super Computer. Today, SYSTAP has commercialized this technology into it’s Blazegraph Accelerator and Blazegraph HPC products. Checkout our options for GPU acceleration of graphs or contact us to learn more: https://www.blazegraph.com/product/gpu-accelerated/. ...
    Downloads: 0 This Week
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  • 10

    FamSeq

    Variant calling on the basis of pedigree information

    It is still challenging to call rare variants. In family-based sequencing studies, information from all family members should be utilized to more accurately identify new germline mutations. FamSeq serves this purpose by providing the probability of an individual carrying a variant given his/her entire family’s raw measurements. FamSeq accommodates de novo mutations and can perform variant calling at chromosome X. To accommodate variations in data complexity, FamSeq consists of three...
    Downloads: 2 This Week
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  • 11
    PyPedal is a Python module that provides tools for the manipulation of pedigrees, simple visualization of pedigrees, and the calculation of measures of genetic diversity from pedigrees.
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    Downloads: 0 This Week
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  • 12
    CNViewer

    CNViewer

    CNViewer shows CNV and LOH data in affected and unaffected individuals

    CNViewer is designed to allow the visual comparison of copy number (CN state) and loss of heterozygosity (LOH) data from Affymetrix SNP 6.0 microarrays between affected and unaffected members of a pedigree. The program aims to allow the identification of regions where the values of either the CN state or the LOH scores are the same in all the affected individuals, but none of the unaffected individuals have the same value. As well as visualising the CN state and LOH data, the program will also display Log(2) ratio, smooth signal and allele difference values that may also be obtained from the Affymetrix SNP 6.0 array (details on how to export the data are here). ...
    Downloads: 0 This Week
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  • 13
    Cattery Management is a pedigree, genetics and cattery management database for cat breeders. It is built in MS Access (Access 97 and above) by cat breeders and has a comprehensive list of features to track and manage all cattery activities.
    Downloads: 0 This Week
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  • 14
    HaploPainter - a pedigree and haplotypes drawing tool written in Perl/Tk. The software processes pedigree information in standard linkage formats combining haplotype information outputs from Simwalk, Genehunter, Allegro and Merlin.
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    Downloads: 24 This Week
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  • 15
    Stammis Internet is a concept which purpose is to help eachother with pedigree online. However it can be used as a single-system for writing down your pedigree / pedigrees. Don't be shy... Give it a try!
    Downloads: 0 This Week
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  • 16
    A genealogy tool for describing and generating HTML pages of complex and vast pedigrees. We use Java, MySQL, MySQL Connector, Java Cup and hopefully Microsoft Installer Utility (MSI). The major obstacle is generating user friendly HTML pages and MSI.
    Downloads: 0 This Week
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  • 17
    Dairy Herder is a web application that allows dairies to track lineage and production records for their cows. A main goal is to have a pedigree generated for any given animal with the click of a button.
    Downloads: 0 This Week
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  • 18
    phpPedigree is intended to be an easy and inexpensive way for dog lovers worldwide to share pedigree and genetic information. The widely-available combination of MySQL and PHP has the potential for making such collaborations easier than ever before.
    Downloads: 0 This Week
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  • 19
    alinks is a set of POJO describing pedigree graphs.
    Downloads: 0 This Week
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  • 20
    Display a genealogy pedigree chart as a fan chart. Each node on the chart has user-defined attributes, such as country of origin, or connection to historical events, and individual notes. Attributes have colors that then display on the fan chart.
    Downloads: 0 This Week
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