Debug of Gadgetron

Reyes Chan — Tue, 18 Dec 2012 02:24:16 -0000

Do I need to re-build the dependencies in debug type? I have successfully built the debug gadgetron by using the release type dependencies but I fail to run it in VS2010.

Debug of Gadgetron

Michael Hansen — Fri, 07 Dec 2012 20:44:05 -0000

In Linux/Mac on the command line, simply type: cd gadgetron/ mkdir build cd build cmake -DCMAKE_BUILD_TYPE=Debug ../ make And make install

Debug of Gadgetron

Thomas Sangild Sørensen — Fri, 07 Dec 2012 10:27:51 -0000

You can specify your build configuration through cmake. The cmake variable CMAKE_BUILD_TYPE can e.g. be set to either release or debug. On the Windows platform you can set this variable directly in the cmake gui. On Linux I usually use the tool "ccmake" to achieve the same (you might need to install a package containing ccmake). Then, in your build folder, type "ccmake ..". This will bring up an interface that easily lets you adapt all cmake variables.

Could not build gadgetron in Ubuntu 11.10

Michael Hansen — Thu, 01 Nov 2012 19:43:02 -0000

Yeah, CUDA 5 has problems. I just pushed the latest version to the git archive. Could you try to check out that version and compile it. I compiled it against CUDA 5 on a Mac (Mountain Lion). And it compiled.

Could not build gadgetron in Ubuntu 11.10

Gabriel Sartori — Thu, 01 Nov 2012 18:58:58 -0000

In forgot to mention that I am using CUDA 5! Maybe thats the reason!

How to build mriclient? Ubuntu12.04&version1.1alpha1

Peter Gatehouse — Wed, 10 Oct 2012 13:56:24 -0000

Sorry everyone, it is now clear what I did wrong. (I am not changing any paths from the deafults in your setup, naturally). It is now all good. Perhaps a note explaining this behavior (that Makefiles of gadgetron will omit mriclient if ismrmrd is not installed when you run cmake ../ for Gadgetron) would be useful added to the manual, though the instructions are clear enough in there, apologies. So my mistakes were: 1. ismrmrd must be installed (sudo make install) BEFORE you run "cmake ../" on the gadgetron, or the makefile omits the building of mriclient. This must be where I went wrong. It's one step back, it's the MAKEFILE that you need to rebuild to reflect installation of ismrmrd 2. beware if you have an old version of mriclient anywhere else within /usr/local/gadgetron get rid of it. If the gadgetron build doesn't replace it you will get very mixed up. ifedata@Gtron:~/Desktop/offline$ ls ${GADGETRON_HOME}/bin blur_2d deblur_3d_cg linalg_test nffth_ms radial_sense_sb blur_3d deblur_3d_sb mriclient nfft_ms radial_sense_sbc deblur_2d_cg denoise_TV nfft radial_ktsense deblur_2d_sb gadgetron nffth radial_sense_cg ifedata@Gtron:~/Desktop/offline$ ls -la /usr/local/ismrmrd total 28 drwxr-xr-x 7 root root 4096 Oct 9 16:48 . drwxr-xr-x 13 root root 4096 Oct 10 12:09 .. drwxr-xr-x 2 root root 4096 Oct 9 16:48 bin drwxr-xr-x 2 root root 4096 Oct 9 16:48 cmake drwxr-xr-x 2 root root 4096 Oct 9 16:48 include drwxr-xr-x 2 root root 4096 Oct 9 16:48 lib drwxr-xr-x 2 root root 4096 Oct 9 16:48 schema

How to build mriclient? Ubuntu12.04&version1.1alpha1

Michael Hansen — Wed, 10 Oct 2012 12:45:20 -0000

Peter, Could you also send us: ls /usr/local/ismrmrd

How to build mriclient? Ubuntu12.04&version1.1alpha1

Michael Hansen — Wed, 10 Oct 2012 12:17:47 -0000

And Thomas, this has nothing to do with ISMRMRD, FindIsmrmrd.cmake was never meant to run from mriclient folder. The path (gadgetron/cmake) for FindIsmrmrd.cmake gets appended to your CMAKE_MODULE_PATH in the toplevel CMakeLists.txt (i.e. gadgetron/CMakeLists.txt) file.

How to build mriclient? Ubuntu12.04&version1.1alpha1

Michael Hansen — Wed, 10 Oct 2012 12:15:29 -0000

Hi Peter, The mriclient gets built automatically with the rest of the Gadgetron distribution. Just go "make;make install" in your gadgetron build folder and it should get compiled and installed where your gadgetron executable is. No need for any special procedure, no need to ever enter the mriclient folder. Could you send the output of the following command: ls ${GADGETRON_HOME}/bin Michael

How to build mriclient? Ubuntu12.04&version1.1alpha1

Thomas Sangild Sørensen — Wed, 10 Oct 2012 12:06:14 -0000

Just to clarify: you do _not_ need to build the mriclient specifically. It will be done automatically for you once the ismrmrd library is located.

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