Search Results for "mri" - Page 3
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Showing 101 open source projects for "mri"
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Endpoint Protection Software for Businesses | HYPERSECUREThe HYPERSECURE endpoint protection platform is a comprehensive suite of products and services enhanced by European third-party solutions. It ensures our customers’ IT security, regulatory compliance, and digital sovereignty.
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InBox
Multiple-view Multiple-selection interface for exploring DTI visualiza
Diffusion tensor magnetic resonance imaging (DTI) is the currently unique in-vivo MRI technique for probing the distribution of neural pathways and micro-structures of biological tissues, thus promising for neurology and neuroanatomy research. However, the 3-Dimensional DTI tractography (DTT) suffers from the overwhelmingly dense resulting fiber tracts in its visualizations which substantially impedes effective exploration, tracts-of-interest (TOI) selection, for example, in the practical clinical diagnoses. ... -
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Gryphon-dti
A Little DSL for Diffusion MRI Visualizations
Based on our many discussions with domain users, we have recognized that domain scientists want a visualization of their own data to be designed and built by themselves. In the broad data visualization scenarios, that Excel and Flash are still the most popular visualization tools even today after long existence is probably attributed to their capabilities of empowering users to design their own visualizations. So in a narrower scope, what if domain scientists with DTI visualizations have a... -
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MRI QA Toolbox
Software for analysis of MRI QA images
This is a redesign of the former project "ACR Toolbox", now designed in a more general way for analysis of all type of MRI quality assurance (QA) images. Contact the project admin directly for support. -
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QuantitativeT2
Glioblastoma in mouse brain analyzed by QuantitativeT2
This video clip shows the analysis of a normal mouse brain by QuantitativeT2, a software tool recently developed by TS Ali (more information can be found at: Ali T, Bjarnason T, Senger DL, Dunn JF, Joseph JT, Mitchell J; Quantitativet2: interactive quantitative t2 mri witnessed in mouse glioblastoma. J. Med. Imag. 0001;2(3):036002. doi:10.1117/1.JMI.2.3.036002.). It is written in XCode. The MRI data was acquired using Bruker 9.4T, 128 T2 echoes were collected for 128x128 image matrix. -
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KneeTex is an open–source, stand–alone application for information extraction from narrative reports that describe an MRI scan of the knee. Given an MRI report as input, the system outputs the corresponding clinical findings in the form of JavaScript Object Notation objects. The extracted information is mapped onto TRAK, an ontology that formally models knowledge relevant for the rehabilitation of knee conditions. As a result, formally structured and coded information allows for complex searches to be conducted efficiently over the original MRI reports, thereby effectively supporting epidemiologic studies of knee conditions.
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aslm
aslm - a slightly modified asl-module
aslm is an object orientated toolbox written in MATLAB. It was developed for common tasks associated with the analysis of arterial spin labeling (ASL) and other MRI data. Portions of the code rely heavily on (or are copied from) SPM (http://www.fil.ion.ucl.ac.uk/spm), marsbar (http://marsbar.sourceforge.net, Matthew Brett et al.), and GIFT (Group ICA of fMRI Toolbox v.1.3, http://mialab.mrn.org/software/gift/ )which are also released under the GNU public licence. The ASL subtraction-routine is originally from H.Y. ... -
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libznz with zindex
This is a fast version of libznz used in NIfTI C library
This library provides notable speed-up for seeking in large compressed NIfTI files. It is compatible with the libznz interface which is part of NIfTI C library to handle multidimensional (mostly MRI) images. Only the replacement of the currently available libznz library is necessary. To reach the expected speed-up the compressed NIfTI data has to be indexed with the included tool. To compile the binaries, the sources available in this project have to be replaced with the ones in znzlib folder of project https://sourceforge.net/projects/niftilib/files/nifticlib/nifticlib_2_0_0/ and the nifticlib has to be compiled. -
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Oga
Oga is an XML/HTML parser written in Ruby
...Oga does not require system libraries such as libxml, making it easier and faster to install on various platforms. To achieve better performance Oga uses a small, native extension (C for MRI/Rubinius, Java for JRuby). Oga provides an API that allows you to safely parse and query documents in a multi-threaded environment, without having to worry about your applications blowing up. Oga uses the version format MAJOR.MINOR (e.g. 2.1). An increase of the MAJOR version indicates backwards incompatible changes were introduced. ... -
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Deliver trusted data with dbtData teams use dbt to codify business logic and make it accessible to the entire organization—for use in reporting, ML modeling, and operational workflows.
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MRI-PDQ:Phase Detection & Quantification
Detect sphere-shaped paramagnetic deposits in MRI datasets
Moved to http://parkermills.github.io/MRI-PDQ/ -
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MRI-PSM: Phase Slope Magnitude Imaging
Generate positive-contrast images emphasizing magnetic field variation
Moved to: http://parkermills.github.io/MRI-PSM/ -
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A collection of code, bundled into a single R package, to perform several aspects of data management, image pre-processing, data analysis and statistical inference related to the quantitative analysis of dynamic contrast-enhanced MRI (DCE-MRI).
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Model Railroad System
The Model Railroad System can help you run your railroad.
The Model Railroad System is a software package that can help you run your railroad. Download the Model Railroad System now and operate your layout, from running trains to working your signals and switches. This software package has support for a network of Bruce Chubb CMR/I USIC, SUSIC, and/or SMINI nodes and/or a network of Lenz’s XPressNet DCC nodes. It now supports Azatrax USB-connected Model Railroad Detectors. Software to create switch lists for freight car forwarding and creating... -
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...We are very sorry that there is a typo in our submission. In particular, the first ''Apache 2.2" on page 6, line 33 should be "Apache 3.2". The corrected pdf version can be downloaded in "Download MRI files".
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DRAMMS
A Deformable Medical Image Registration Toolbox
...Some typical applications of DRAMMS include, -- Cross-subject registration of the same organ (can be brain, breast, cardiac, etc); -- Mono- and Multi-modality registration (MRI, CT, histology); -- Longitudinal registration (pediatric brain growth, cancer development, mouse brain development, etc); -- Registration under missing correspondences (e.g., vascular lesions, tumors, histological cuts). DRAMMS runs in command line in UNIX/Mac OS, It accepts Nifti/ANALYZE/MetaImage image formats. It is fully-automatic --- takes two input images, and generates a registered image and (optionally) the deformation field. ... -
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MatrixUser
A Multi-functional GUI-based Program for Image Processing and Analysis
The MatrixUser project is moving to GitHub, the latest version can be obtained from https://leoliuf.github.io/MatrixUser/ Most of the medical images (e.g. CT, MRI, PET, etc.) comprises multiple frames which represent slices, phases, timing etc. from the same imaging object. Those images can be saved as multidimensional matrices in Matlab thanks to Matlab's powerful support of multidimensional data representation. However, within Matlab, most of image manipulation functions are limited or tailored for processing two-dimensional matrix. ... -
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METAlab GTG
Matlab toolbox to run a GLM on graph theoretic properties in MRI data
This Matlab toolbox runs a GLM on graph theoretic network properties in brain networks. The GLM accepts continuous & categorical between-participant predictors and categorical within-participant predictors. Significance is determined via non-parametric permutation tests. The toolbox allows testing of both fully connected and thresholded networks (based on a range of thresholds). The toolbox also provides a data processing path for resting state fMRI data. Several options for partialing... -
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K-Surfer
A KNIME extension for the management and analysis of FreeSurfer Data
...For installation guide read the pdf inside the zip. References: Sarica Alessia, Giuseppe Di Fatta, and Mario Cannataro. "K-Surfer: A KNIME Extension for the Management and Analysis of Human Brain MRI FreeSurfer/FSL Data." Brain Informatics and Health. Springer International Publishing, 2014. 481-492. Sarica A, Di Fatta G and Cannataro M (2014). K-Surfer: A KNIME-based tool for the management and analysis of human brain MRI FreeSurfer/FSL Data. Front. Neuroinform. Conference Abstract: Neuroinformatics 2014. doi: 10.3389/conf.fninf.2014.18.00003 -
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A scheme to significantly speed up the processing of MRI with FreeSurfer (FS) is presented. The scheme is aimed at maximizing the productivity (number of subjects processed per unit time) for the use case of research projects with datasets involving many acquisitions. The scheme combines the already existing GPU-accelerated version of the FS workflow with a task-level parallel scheme supervised by a resource scheduler.
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ivantk
Image-based Vascular Analysis Toolkit
The Image-based Vascular Analysis Toolkit is a set of multiplatform C++ libraries for vascular analysis of (3D) medical images, typically CT or MRI. It can be considered as an extension of the Insight Toolkit (ITK) for vascular image analysis, with methods for detection, extraction and modeling of vascular structures. -
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Boundary Shift Integral
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MRmap
Parametric MRI: T1 mapping, T2 mapping, T2* mapping
A flexible tool for medical research in magnetic resonance imaging (MRI) to generate parametric images (maps) from multiple types of pulse sequences (IR-prepared, Look-Locker, and MOLLI T1 mapping; single- and multi-echo T2/ T2* mapping). -
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DeskVOX is a real-time visualization tool for 3D data sets like image stacks from CT or MRI scanners, or confocal microscopes. It has an easy to use GUI and runs under Windows or Linux.
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Permeability GUI (PermGUI)
Graphical User Interface to calculate permeability measurements
PermGUI is a Matlab-based software which is developed for quantifying blood-brain barrier permeability from dynamic contrast enhanced (DCE) MR images. It does it in two steps: 1) calculating T1 maps from DCE-MRI, 2) calculating permeability parameters (such as permeability coefficient Ki and plasma volume Vp) using the T1 maps based on the Patlak method. It includes features like automatic and manual selection of the arterial input function curve for deconvolution. PermGUI can be downloaded for free from http://www.quantilyze.com/permgui . -
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MRI neonatal atlas app
Use this application to segment neonates mri brain scans
Thi application helps the segmentation of mri brain images into 6 tissue classes by using the T2 neonatal atlas available at http://www.brain-development.org.
