Search Results for "/storage/emulated/0/android/data/net.sourceforge.uiq3.fx603p/files" - Page 49

Showing 1243 open source projects for "/storage/emulated/0/android/data/net.sourceforge.uiq3.fx603p/files"

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  • 1

    motif_counter

    Program to pull out specific motifs from bam sequence files

    ...Designed to look for the number of variant telomere repeats and reads in a whole genome sequencing dataset. The program prompts for a character string, and the number of times that string should be present in each read, then pulls out the data. Motifs can either be consecutive or uncoupled from each other across the read, and analysis endpoints include read number and percentage tables, compiled bam files with only motif-containing reads, or bam files with motif-containing reads together with their paired end.
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  • 2

    GenEpiO

    The Genomic Epidemiology Ontology covers food-borne disease terms

    Here we introduce a Genomic Epidemiology Ontology (GenEpiO) that covers vocabulary necessary to identify, document and research food-borne pathogens and associated outbreaks. We envision various subdomains including genomic laboratory testing, specimen and isolate metadata, and epidemiological case investigations. The project files are currently hosted at https://github.com/GenEpiO/genepio/ . Here we provide the genepio-consortium@lists.sourceforge.net listserve. Terms for these subdomains have partially been implemented in the main file, **genepio.owl**, which imports terms from over 25 OboFoundry.org ontologies. Also we have added a number of terms that so far haven't been covered via OboFoundry. ...
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  • 3
    The SchemaWalker is a Java application able to read a any schema and produce XForms web pages for user selected nodes grouped into webpages to allow editing of XML data files.
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  • 4

    DIVA_Sandbox

    Discovery Innovation through Visual Analytics

    Sandbox of visual analytics tools for translational informatics. Prototype data visualizations using QT, VTK, and R
    Downloads: 0 This Week
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  • 5
    A framework for image analysis and data analysis, aimed towards microscopy and the needs of current research.
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  • 6
    analytical framework for data analysis
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  • 7
    BIRBU (BIological Relationship BUilder) is a Java tool for microarray gene expression data analysis. BIRBU identifies biologically significant relationship between genes using microarray data and prior knowledge on relationships between genes.
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  • 8
    ProteinArchitect facilitates the visual exploration of the architecture of proteins, including conserved domains, secondary structure elements and structurally flexible regions, e.g. in the context of the analysis of protein superfamilies.
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  • 9
    Basic life is an application that desires to simulate basic life based on some basic chemistry/physics rules. This environment provides particles that can bond, vibrate, react, etc. in order to create basic cells
    Downloads: 0 This Week
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  • 10
    A visualization software for BioPAX files. Uses compound graphs for showing complexes and compartments. Can also export to SIF and display SIF files.
    Downloads: 0 This Week
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  • 11

    TumorML

    TumorML is an XML-based language for cancer models and respositories.

    We've moved to GitHub: https://github.com/djbytes/tumorml
    Downloads: 0 This Week
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  • 12

    my_kegg

    Database built using kegg allowing to cross data

    Database built using kegg allowing to cross data from different biological analysis technics.
    Downloads: 0 This Week
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  • 13
    ** IMPORTANT NOTICE ** 10 Feb 2006 Code is being moved to the SMI subversion repository (http://smi-protege.stanford.edu/svn/owl/trunk/) Project will continue to be open source. ProtegeOWL info at: http://protege.stanford.edu/overview/protege-owl.html
    Downloads: 0 This Week
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  • 14
    The Integrative Biology VRE is a web-based graphical user interface and repository that provides an environment where biological simulation experiments can be constructed without the need for any knowledge of unix, cluster computing, or shell scripting.
    Downloads: 0 This Week
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  • 15

    cel2fr

    Tool to convert Affy cel files to be Illumina Final Report compatible

    cel2fr is a perl script that can be used to convert Affymetrix CEL files into a format matching an Illumina Final Report. The primary use of this tool is to work in concert with the CNV analysis tool CNVision (www.cnvision.org), but its use is ideal for meta-studies combining multiple datasets. Current version is not yet functional.
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  • 16
    A main aim of this project is to deliver an infrastructure for HL-7 v3 compilant messages exchange. This infrastructure should be based on existing real time queueing system such as Apache ActiveMQ. A product of this project does not include user interfa
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  • 17
    danaides

    danaides

    Meta data extractor based on ontologies

    Danaides stores meta-data from biological banks in a graph databases as well as OBO formatted ontologies. It also provides a web query interface to parse ontologies or extract nodes based on ontology requirements. Example: Get all known elements that are in family of Fish (species ontology) AND a RNA (sequence ontology).
    Downloads: 0 This Week
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  • 18

    pymzML

    Python module to interface mzML data in Python

    Python module to interface mzML data in Python based on cElementTree with additional tools for MS-informatics. CITATION Please cite us when using pymzML for your publications. Bald, T., Barth, J., Niehues, A., Specht, M., Hippler, M., & Fufezan, C. (2012). pymzML - Python module for high throughput bioinformatics on mass spectrometry data. Bioinformatics, 1-2. doi: 10.1093/bioinformatics/bts066
    Downloads: 0 This Week
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  • 19
    Vertical search engine for health data based on PHP and Zend Framework. Data-mining health-related databases provided by US government agencies.
    Downloads: 0 This Week
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  • 20
    A set of tools to process and analyze Fasta files. This project is inscribed in the field of Proteomics.
    Downloads: 0 This Week
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  • 21
    videonetwork

    videonetwork

    A simulator for self-organizing video replication and more

    ...We tackle these problems by introducing a bio-inspired algorithm, which lets the content place itself where it is needed. It is robust, scalable and adaptive. The transport path of content is exploited to replicate content and limited storage space is handled by clean-up mechanisms. We implemented a simulator to show the algorithm's performance and to test its behavior under real circumstances. It is easily extendable to support several new scenarios or changes to the algorithm (see replication and client models).
    Downloads: 0 This Week
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  • 22
    A suite of tools for discovering and genotyping genome structural variation from sequencing data, including the Genome STRiP algorithm.
    Downloads: 0 This Week
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  • 23
    The program structure is a free software package for using multi-locus genotype data to investigate population structure.
    Downloads: 0 This Week
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  • 24

    Paired Sequence File Comparison

    Fast validation of FASTQ files containing paired-end reads

    For a summary and user's guide, please see the Wiki page: https://sourceforge.net/p/psfc/wiki/Home/ The Wiki page can also be accessed via the top toolbar.
    Downloads: 0 This Week
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  • 25
    A .Net/SQL server implementation of a bioinformatics data warehouse.
    Downloads: 0 This Week
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