Search Results for "/storage/emulated/0/android/data/net.sourceforge.uiq3.fx603p/files" - Page 17

Showing 1721 open source projects for "/storage/emulated/0/android/data/net.sourceforge.uiq3.fx603p/files"

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  • 1

    ConvertMAS

    ConvertMAS converts Chemical File Formats mol, mol2 and sdf.

    ConvertMAS - molecule converter; use to convert Chemical File Formats. It works on mol, mol2 and sdf files. It converts single file to respective formats. It will split sdf file with multiple molecules into seperate single files of any desired format. Also ConvertMAS creates sdf files from joining of mol, mol2 and sdf files. This is stand alone application; hence no need of internet connectivity to get results. It will generate output files in less time. ...
    Downloads: 0 This Week
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  • 2
    WOLFGANG

    WOLFGANG

    Editor for Petri nets

    Wolfgang is a lightweight tool that allows users to easily create and edit Petri nets and check them against general and workflow specific net properties. Specifically, Wolfgang supports full PNML conform editing functionality of Place-Transition Nets (P/T-Nets) and Colored Petri Nets (CPN) as they are defined in the SEPIA package. Its simple and easy to use interface allows to quickly create Petri nets from scratch, edit them graphically in many ways, store and even export them as PDFs. Use...
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  • 3
    Arduino CNC Controller

    Arduino CNC Controller

    APP for control a manual mill and obtain a CNC Mill

    APP for Android 3.1 or greater to implement a CNC Controller that send orders using USB port to Arduino Mega 2560 R3 board to control 3 stepper motor to have a real CNC mill /// APP para Android 3.1 o superior para implementar un Controlador de CNC que envia ordenes usando el puerto USB a la placa Arduino Mega 2560 R3 para controlar 3 motores paso a paso para tener una fresadora de CNC real.
    Downloads: 1 This Week
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  • 4
    SEPIA: Security-oriented PN Framework

    SEPIA: Security-oriented PN Framework

    Petri net framework for security related modeling and reasoning.

    SEPIA provides implementations for various types of Petri nets. Along Place/Transition-nets, it supports Petri nets with distinguishable token colors and defines coloured workflow nets, where coloured tokens are interpreted as data elements used during process execution. To support information flow analysis of processes, SEPIA defines so-called IF-Nets, tailored for security-oriented workflow modeling which enable users to assign security-levels (HIGH, LOW) to transitions, data elements and persons/agents participating in the process execution. SEPIA builds upon TOVAL (http://sourceforge.net/p/toval), JAGAL (http://sourceforge.net/p/jagal) and SEWOL (https://sourceforge.net/projects/jawl/). ...
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  • 5
    merlin-sysbio
    ...Also, merlin includes tools for the compartmentation of the model that predict the localisation of the proteins encoded in the genome, and thus the localisation of the metabolites involved in the reactions induced by such proteins. Finally, merlin expedites the transition from genome-scale data to SBML metabolic models, allowing the user to have a preliminary view of the biochemical network.
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  • 6
    SEWOL: Security-oriented Workflow Lib

    SEWOL: Security-oriented Workflow Lib

    Java Library for workflow handling

    SEWOL provides support for the handling of workflow traces. It allows to specify the shape and content of process traces in terms of entries representing the execution of a specific workflow activity. Currently it supports plain text, Petrify, MXML and XES log file types. In order to specify security-related context information, SEWOL provides access control models such as access control lists (ACL) and role-based access control models (RBAC). SEWOL uses and encloses the following...
    Downloads: 1 This Week
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  • 7

    Protein Contact Matrix Generator

    Command line application to generate contact matrix from proteins (3D)

    A protein contact matrix is 2D representation of the distances between amino acid residues in a 3D protein structure. Protein Contact Map Generator (PCMGen) is a command line tool which takes protein 3D structures (PDB format files) as input and computes contact distances between two chains (from single or two different proteins). These matrix files can be further visualised as Contact Maps using other visualization tools/ programs (like R-heatmaps). Contact Maps can be used to understand proteins' : 1. Secondary structures 2. Conformational arrangements 3. ...
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  • 8
    XMLPipeDB is a suite of tools for building relational databases from XML sources with minimal manual processing of the data. While the applicability is general, our motivation was to facilitate the management of biological data from different sources.
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  • 9
    Microscopy Image Processing Package
    XMIPP is an image processing suite for 3D-reconstruction of biological specimens from transmission electron microscopy data. NOTE that stable releases (including binaries) are longer stored at Sourceforge, but are available at http://xmipp.cnb.csic.es
    Downloads: 0 This Week
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  • 10
    Hadoop-BAM is a Java library for the manipulation of files in common bioinformatics formats using the Hadoop MapReduce framework with the Picard SAM JDK, and command line tools similar to SAMtools. The file formats currently supported are BAM, SAM, FASTQ, FASTA, QSEQ, BCF, and VCF. For a longer high-level description of Hadoop-BAM, refer to the article "Hadoop-BAM: directly manipulating next generation sequencing data in the cloud" in Bioinformatics Volume 28 Issue 6 pp. 876-877, available online at: http://dx.doi.org/10.1093/bioinformatics/bts054 Note that the library part of Hadoop-BAM is mainly for developers with experience in using Hadoop. ...
    Downloads: 0 This Week
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  • 11
    SterHemel

    SterHemel

    Volg de gebeurtenissen aan de sterrenhemel op je mobiel

    De gebeurtenissen aan de sterrenhemel in Nederland en België op je mobiel! SterHemel toont in een handomdraai wat er aan de sterrenhemel te zien is met het blote oog, een verrekijker of een kleine telescoop. De app is bedoeld voor waarnemers in Nederland en België en is daarom in het Nederlands/Vlaams gemaakt. De app toont de gebeurtenissen aan de sterrenhemel onder andere in de vorm van een astrokalender, de tab "Vannacht aan de hemel" met inforatie over Zon, Maan planeten en...
    Downloads: 0 This Week
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  • 12
    Open Information Integration
    Open Information Integration Tool Suite (Open II) is used by analysts and programmers to accelerate data integration and harmonization across organizations. OpenII has a neutral schema repository for browsing and comparing all sorts of data models. OpenII is built as a Rich Client Platform Application on top of Eclipse 3.x. Developers need to download Eclipse, install the RCP support, the Fatjar plugin and the Delta Pack in one of the 3.x flavors.
    Downloads: 0 This Week
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  • 13

    Drug Extraction

    Drug name extraction

    ...accuracy: 95.25%; precision: 85.70%; recall: 76.20%; FB1: 80.67 Using GATE Corpus Benchmark: Strict: P: 0.65 R: 0.73 F1: 0.69 Lenient: P: 0.74 R: 0.84 F1: 0.78 The details of how to reproduce evaluation, see README. To use standalone version for tagging download DrugExtractionStandalone.tar.gz from Files.
    Downloads: 0 This Week
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  • 14
    Taxy is a tool for browsing and quering data organized as a taxonomy. Through the use of plugins it allows to connect to different data sources, such as the NCBI species taxonomy or the catalogue of biomedical services of the EU project ACGT.
    Downloads: 0 This Week
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  • 15

    UNSW Metadata Stores (ResData)

    An institutional research metadata management repository.

    ResData is an institutional metadata repository to facilitate effective management, discovery and sharing of institutional research data collections. It integrates with institutional enterprise systems, such as HR and Grant management systems to facilitate re-use of existing information, such as People and Project records. ResData has been developed by the Library Repository Services, University of New South Wales. The work was supported by the Australian National Data Service (ANDS) under its MS21 program. ...
    Downloads: 0 This Week
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  • 16

    SuRankCo

    Supervised Ranking of Contigs in de novo Assemblies

    SuRankCo is a machine learning based software to score and rank contigs from de novo assemblies of next generation sequencing data. It trains with alignments of contigs with known reference genomes and predicts scores and ranking for contigs which have no related reference genome yet. For more details about SuRankCo and its functioning, please see "SuRankCo: Supervised Ranking of Contigs in de novo Assemblies" Mathias Kuhring, Piotr Wojtek Dabrowski, Andreas Nitsche and Bernhard Y. ...
    Downloads: 0 This Week
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  • 17
    scipion-xmipp

    scipion-xmipp

    Image processing framework to integrate EM software packages.

    Scipion is an image processing framework to obtain 3D models of macromolecular complexes using Electron Microscopy (3DEM). It integrates several software packages and presents an unified interface for both biologists and developers. Scipion allows to execute workflows combining different software tools, while taking care of formats and conversions. Additionally, all steps are tracked and can be reproduced later on. Xmipp is a well-known package in the EM image processing. It is integrated...
    Downloads: 0 This Week
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  • 18
    Auto Primer3

    Auto Primer3

    Automatically design primers to genes/coordinates using primer3.

    PLEASE NOTE: THIS PROJECT PAGE WILL NO LONGER BE UPDATED - PLEASE USE THE GITHUB PAGE (https://github.com/gantzgraf/autoprimer3) TO FIND THE LATEST RELEASE (https://github.com/gantzgraf/autoprimer3/releases/latest). AutoPrimer3 retrieves gene information, DNA sequences and SNP information from the UCSC genome browser and uses primer3 to automatically design primers to genes or genomic coordinate targets. Primers may be designed using information from any of the UCSC hosted genomes...
    Downloads: 0 This Week
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  • 19
    GESPA

    GESPA

    Accurately predicts disease association of single nucleotide mutations

    ...A host of annotations are provided: orthologous and paralogous multiple sequence alignments, UCSC annotations, reports detailing conservation of a nsSNP in alignments, and links to external nsSNP and gene information such as relevant publications. GESPA is connected to a constantly updating SQL server allowing for fast data retrieval. NOTE: REQUIRES Java 1.7.0+. Port 1433 cannot be blocked by firewall, network, or antivirus program. Please cite: http://tinyurl.com/oj7p84a
    Downloads: 0 This Week
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  • 20
    Gene Studio is a free tool for modelling of DNA manipulation. It will allow to work with vectors, to design primers, to clone molecules and provide user friendly intewrface.
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    Downloads: 22 This Week
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  • 21
    GenomeView
    GenomeView is a genome browser and annotation editor that displays reference sequence, annotation, multiple alignments, short read alignments and graphs. Most major data formats are supported. Local and internet files can be loaded. This project has moved to GitHub: https://github.com/GenomeView/genomeview
    Downloads: 0 This Week
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  • 22

    glSatellite Demo

    Technological demo of OpenGL ES 2 Android NDK

    ...Additionally to 3D features presented the application is: - using NDK with C++11 features compiled by LLVM clang; - mixing Java views with OpenGL views (Java is used for settings activity, information and ads panels); - using Android custom message queue to send asynchronous messages from Java to JNI
    Downloads: 0 This Week
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  • 23
    CPS Wildfire Management Tool

    CPS Wildfire Management Tool

    A wildfire decision support system and visualization tool from Emxsys.

    The Wildfire Management Tool (WMT) predicts the potential fire behavior of a wildland fire. WMT incorporates a 3D terrain viewer, the tenets of the Campbell Prediction System (CPS) and the Rothermel fire spread equations to depict fire behavior. WMT is used to adjust tactics & strategies to ensure the safety of firefighters and the effective use of firefighting resources. Requires Java 8 (included) - http://www.java.com/download
    Downloads: 2 This Week
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  • 24

    TE-locate

    a tool for calling transposons

    TE-locate is a tool to locate all copies of sequences in a reference sequence using read-pairs. TE = Transposable Element Input is NGS-data. Please download all files first (including the demo data) and make your first run then.
    Downloads: 5 This Week
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  • 25
    GeoKettle
    GeoKettle is a powerful, metadata-driven spatial ETL (Extract, Transform and Load) tool dedicated to the integration of different data sources for building and updating geospatial databases, data warehouses and services.
    Downloads: 8 This Week
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